Gene detail

Detail information of GWHGAAEX015383/evm.TU.scaffold_66.57

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743767230\|ref\|XP_010913870.1\|	7.43E-54	PREDICTED: bZIP transcription factor 60 [Elaeis guineensis]
Swissprot	tr\|Q9C7S0\|BZI60_ARATH	8.00E-10	bZIP transcription factor 60
trEMBL	tr\|M0S1D3\|M0S1D3_MUSAM	2.00E-43	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P19750_001}
TAIR	AT1G42990	3.00E-09	basic region/leucine zipper motif 60

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000073	1862995	1866543	+

Transcript Sequence
>GWHTAAEX015383 CGTCGTTCCAAACCCTAAATTACTAAATTTCTCACAATATCCACTGATAATTTTTAAAAAGCCTCAATCAAAACATTAAAATTATCAAAACCACAAGGGACTATATTATTTAAATGTGTCATTGAGCGTAGGTGTTTGATCAATGCTATCTCGCTCGCGTAGAGGAATCGTTGAACGAATTTTCTGTAGTTGATACCACACATTCTTGGCGAGCAAGAAATCGCCAGGTTCTTAAATTCCTATATTATACCGCTTCTGTCCTGCCTCTGCCTAACCATCTTTTCCGCCTCCCTCCCATGGCGGAGCCTGACATCGCAGATGAAATCGACATCGGTTTTCTCTTGCAACGATTCAGCGATGATCCTATCGGCGACTTCGACCTCGATCTCGATCTTCTCCGCCATTCCTGGGTTTCCGCCTCCGATCCGCCTCCTAATGTTTTCCAGATTTCTGGATCTTCATCATCTGTTCATCCTACGAATTTCTTCTCTTCGCCTCCGCAGCCAGAGTCTCCGGATTCCACCTCATCTTTGGTGAACTACGTCGAGAAGTTCCTTATGGACGATGTCGATTGGGACGAAGGAGATAATGGGATAGGCGATGAAGGTATGATTGATCAATTTTTATCCGGCGTATTTTTGGACGGCTCAGATGCTCCTGAGACCGCTTATGATGCTTCGGAAGAGGAACAGAAGCGGGAGATGGAAATCCCCGACGTAGCAGCTGCGGAGGGGAATGAAGATGTTAGCAACAAGAAACTAAGAAGGAAAATGAGGAATAGAGAATCTGCTATGATCTCGAGGGAGAAGAAGAAGATATACATAAAGGATCTAGAGATAAAGAGTGAGCACATGGGTACAGAGTGTCGCCGCCTTGACCATATTCTCCAGTGCTGCTTGGCTGAGAACATGGCTTTGCGCCATAGGTTGGAGCTTCAGAAGAATAACCCCTGCGGTGTTCCCGTCGCCAAACAGGAGTCTGCCGTACTCTTTATGGAATCCCTGCTGCTGGGTTCCCTGTTTTGGTTCGTGAGCGTCGTATGCTTATTCCTTGTCCCGAGCCTGCGATGCCTAACAGGTCCAATCTCGAAAGCCTTAAGCGAGTCAGGAAGAGATCTCACAATGGCTCTCAGGTTAAGTAAAAGTTTAAAATTCTTTCTGCTCAGTAGGCTGAGACGGGGATGCCGAAGTATGAGGTCTAGAATGAAGCTCCATTTATCTTTTTCCCCTTGCTGTTCTTGCCTGATTTGAATTGTTTTATTGCCTACGTGGATTAACTTTACTTTAATTTTGAACTTATTGTATTATCAAGTTTCCACCGTTGAATTTTCTGAATCAGAGTTTGATTATAAAGCCATAACAAGCCATGCTAAGGATGAACATTACAGATTAGAAATCTTACAAAACTGCTAAATCCTTGTTCTTAGAATCAATGGAGTTCTTTCAGTGAGGTTTGAAGTTAATGATAAGAATGACACAATGAAATAAAAATCATGACCAAGAGTAAACATTATTTTTTGCATTCACTTGTCATCCATTTCACAGTGCTCTTTGATGACTAAAAGTTTTAGGATAGCATGAGGCAATAGTTAGATTCATATTCTATTCAATAGTCATTATATGAATAAAAAAAAATGCTGTATTTGTTTTGCAGAGAATGTAATTTGTATTTTGGCTCTGTAGATTGTAACAACTTCTTCATGTTGGGGGGGTCGAAGGAAGCTAGGACTAGTAAAATTGGGGCCTGGAAAGAAATTAAAGGGGTCCTTAGACAGAGGGGTTAGGGTGGTATGACTGATTCTGGATGGTGGGCCAAGCCCGATGGAATTGAGATCAAAACCAGGGGAATTGGATTCGAAGTGGTCAGGGAAAACTTGGGTCGAGGAAATTGAAGCCAGGTGATTCGGAAATGGGGAGCTAGGGCTTGGTAATAATGGTAGGGCTAAAATTTGGGTGAATATTAGAGCAGGAGTCTGCGTTGCATCTGCATTGTAGGCCAAGTAAAATTAGGTAATTTTAAGCACTTGATAGACTCTTGAAATCATCTAATATATATACCTTCAATGGGAACAAAGTAGAAAAATCTGCTTCTGCATGAACCACAACAATTCTTTATTCACCACACGATACATTACATTATAGTCCCATGGGCATAATGTATTTTTCTATATATTGACTGTTGTGTGATTTTGAGTGTTTTGTGGAGAGAATTGCGTTAAACCCAAGTGACCTGTAATGTATTATTTTGCAATGTAATCTTATTGATAGCACGATTTTTTTGTGATGGGTCTCTTTACCCTTTCAATTCAGTTTTGTTGCCATTCTATCTATCCCCTATCTTTGATATTTTGATATGCTCATACGGGCCATCAGTAACATTCTATAGAGGCATCATATTCTATTGATAACTGTGAGGCAGAATAATTAAAAAGCATAGTTGAATTTGATCTTTCATTTGCATGAATCTAAACAACATCACATGCCATATGCTTTGAGCAGACAATAGAACAATCTTTTAACCATTGTTTATTTTTCTATATTTTCAATTTTCTATTCCTAGTAGGACAGTAACTAGTTGCAAATATGGAAGGAAAGCACTGGAGTAGTCAGAATGAATAGGAATTCTTACTTACACAAATATATACTCTTTTTGTGGTTCAACTAAACCTTTGAATATTCACAGTGACATCAACCTACAATTTAGATTTAACTGTAAATGCCTATGTAAGCATAGAATTGTCAAGCGTATCTAATTCTCTAGAAGTTATTTTACTTCAAGAACTTATATACGTTTGGCATTGACTTGATAAAAAGGGTTATGTGGCATTAAGGTTGGATTCCATTAGAGTTTGAGCGAGTCAGTCTAAACTCGAGTTCGAAAATTTTGAGTTTAGGCCTACTTACTCAAATTGAGTTCGAGCCGAGTCCAGTTTGACTCATTAACGTTCGAGTCCGAGTTGACTAGAACTTGATTTGAGTCGACTCGAAATTATATTTCAACTTATAAATTTTGAATTCGTGAGGACTCGAATTTGGTTTGAGTCGGCTTGAAATTTTTTTTTTTTAAATTTATAAACAATTTAAATGTACTTCTAAAAACAATTAAGGATATTAAATATTAATATTTATCTTACAAATTTGTTGATAAAAAATAAACAGAGATGTGTCACAGTTTCAATAATGC

Network for GWHGAAEX015383

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00170.20	bZIP_1	153	197	1.10E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	19.340
SRP064423	SRR2545915	Juvenile tuber	16.470
SRP108465	SRR5643513	five period of Gastrodia elata	16.220
	SRR5643514	five period of Gastrodia elata	16.420
	SRR5643515	five period of Gastrodia elata	17.870
	SRR5643524	five period of Gastrodia elata	18.180
	SRR5643525	five period of Gastrodia elata	30.030
	SRR5643528	five period of Gastrodia elata	49.160
	SRR5643658	five period of Gastrodia elata	32.820
	SRR5643659	five period of Gastrodia elata	18.290
	SRR5643660	five period of Gastrodia elata	20.390
	SRR5643661	five period of Gastrodia elata	19.630
	SRR5643662	five period of Gastrodia elata	24.870
	SRR5643663	five period of Gastrodia elata	18.950
	SRR5643664	five period of Gastrodia elata	21.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	17.590
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.940
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.060
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	19.200
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	17.580
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	17.610
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.560
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.650
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.850
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.620
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.440
SRP279888	Gastro	Gastrodia elata tuber	16.73
	Juven	Juvenile tuber	19.69
	Mother_Gastro	Mother tuber of Gastrodia elata	49.17
	Mother_Juven	Mother tuber of Juvenile	28.33