Detail information of GWHGAAEX015395/evm.TU.scaffold_66.71
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|292493899|ref|YP_003529338.1| | 2.00E-133 | sucrose-phosphate synthase [Nitrosococcus halophilus Nc 4] |
| KOG | KOG0853 | 0 | Glycosyltransferase |
| nr | gi|334363533|gb|AEG78833.1| | 0 | sucrose phosphate synthase [Dendrobium catenatum] |
| Swissprot | tr|O22060|SPSA1_CITUN | 0 | Probable sucrose-phosphate synthase 1 |
| trEMBL | tr|F6LR33|F6LR33_9ASPA | 0 | Sucrose phosphate synthase {ECO:0000313|EMBL:AEG78833.1} |
| TAIR | AT5G20280 | 0 | sucrose phosphate synthase 1F |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000073 | 2471751 | 2490545 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015395
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00862.18 | Sucrose_synth | 168 | 389 | 3.70E-12 |
| PF00534.19 | Glycos_transf_1 | 470 | 644 | 1.70E-23 |
| PF05116.12 | S6PP | 909 | 998 | 1.40E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT4 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00696 | E2.4.1.14 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Starch and sucrose metabolism | map00500 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005985 | Biological Process | sucrose metabolic process |
| GO:0016157 | Molecular Function | sucrose synthase activity |
| GO:0046524 | Molecular Function | sucrose-phosphate synthase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 57.950 |
| SRR2545915 | Juvenile tuber | 183.260 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 66.150 |
| SRR5643514 | five period of Gastrodia elata | 109.430 | |
| SRR5643515 | five period of Gastrodia elata | 100.200 | |
| SRR5643524 | five period of Gastrodia elata | 97.680 | |
| SRR5643525 | five period of Gastrodia elata | 87.460 | |
| SRR5643528 | five period of Gastrodia elata | 97.900 | |
| SRR5643658 | five period of Gastrodia elata | 84.050 | |
| SRR5643659 | five period of Gastrodia elata | 82.220 | |
| SRR5643660 | five period of Gastrodia elata | 73.130 | |
| SRR5643661 | five period of Gastrodia elata | 98.400 | |
| SRR5643662 | five period of Gastrodia elata | 80.180 | |
| SRR5643663 | five period of Gastrodia elata | 79.940 | |
| SRR5643664 | five period of Gastrodia elata | 77.070 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 84.330 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 77.470 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 78.940 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 58.010 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 56.270 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 54.430 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 55.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 55.880 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 113.420 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 99.500 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 118.630 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 118.630 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 113.29 |
| Juven | Juvenile tuber | 107.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 67.48 | |
| Mother_Juven | Mother tuber of Juvenile | 135.49 |