Gene detail

Detail information of GWHGAAEX015399/evm.TU.scaffold_66.75

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2375	7.00E-103	Protein interacting with poly(A)-binding protein
nr	gi\|743839326\|ref\|XP_010936971.1\|	0	PREDICTED: polyadenylate-binding protein-interacting protein 4-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q94AM9\|CID4_ARATH	9.00E-108	Polyadenylate-binding protein-interacting protein 4
trEMBL	tr\|B9S5T2\|B9S5T2_RICCO	6.00E-178	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF41019.1}
TAIR	AT3G14010	7.00E-103	CTC-interacting domain 4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000073	2628120	2687868	-

Transcript Sequence
>GWHTAAEX015399 CGGGAACCCGAGCCCGTACCCAAATCTAAGCCCCAACTATATCCTCCAATCGCTGCTGCTCCTAAACTGCATTACTGTCTCTCTTTCCTCTGCCTTTCGTTCGATCTCTTCCTTGCGATCCCCAAATCCAATAACTAAACTGGAATGCTGTGCCGTATACATCACCATCGGCCTCTCATCAGTCTTGCGCTCATCTTCTCTGCGTAATCTCTGCTGACAGATCGTCGGACGACACGAACGGCTATCAATAAATCTTTTGCAATCGAAATCATCTAGGAAAGCAGATATTTGGAAAGCTTCGGAGATAGTCCAGAATGAACTTGCAACAAGGTATTCAGTCAAGAGCTTCTGCCAATGGGTTCAATCGGCGTAGATTTGATAGAGAAGGTGGTGCGAGGATAGAAAATAAGATGCATCCTGGAAAGTTGGGTTCTGGCAATTATGCAAGTACAGTGAATGGAGGCAAGAGTGTGCCTGTTGCCAGTCCTTCACGTGATCGTTTGATTTATGCTGCTACATGCCTCATTGGTCTTCACGTTGAAGTTCATGTGAAAAATGGATCAGTATTTTCTGGGATTTTTTGTTCCGTGAATGCAAAAGATTTTGGAATTGTTCTAAAAATGGCTCAACTTGTTAAGGATGGTTCTGTTAGAGCACATAAGGCTGTACCAGAAACACATAAAAGGCCTCAAACTATTATCATACCGGCTAGAGAGTTTGTTCAAATTATAGCAAAGGATGTGCCATTAGTTAGCGAGGAATTTTCTAGTAGCAATGCACAGGAAAGGCGAAAAGATCTCATGATAGATTCTGCTATTTCTCGCTCTCATAATGTTGAAGTAGAGCGGGAACTAGAGCGCTGGACACCTGATACGGATGTTCCTGAATGCCCTGAACTAGACAACATTTTTGATAGCACCTGGAATAGGAATTGGGATCAGTTTGAAACAAATGAAACCTTATTTGGAGTAAAAAGCACATTTAATGAGGAACTTTACACAACCAAGCTTGTGAAAGGCCCACAGATGCACGAGATTGAAAGAGAGGCTTCTAGAATTGCTAGAGAAATAGAAGGAGAGGAAACTCACGATCTTCATCTGGCTGAGGAAAGAGGAATGCAATTTTATGATGGTTTTGACATTGATGAGGAAAGCAAATACTCAGCTGTTCATAGGCAAATTGATGATGACAAATATGAGGAAAATGAGGATCTATCCTCGGATTCTCTTAATACAGAAACTTTTGGTGGGTCTATCAGGCCTGAAATTCCTAGATCCTATTCAAAAATTTCTGGAGAGACAAAATATGATGAAGGCATAGTATCATCATCTTATTCAGCTGTGGATGAGGAGATATTGTCAAGATGTGCTTCTGACAAAGATCCACATAGCTTAGATTTTGATAAGAATTTTAGTTTGTCCACTTCTGATGATCCAAAGAAGTGTACAACTGCAAATGACTCCAGCAGGGCGACTCATCAGTTTGAGGACAAGCTGGTCCAATATGATAATGAAAACAAATCTTGCTTGCTTGAGAAATCTGTTAAGGTTTCTTGGGATGCTCATAAAATGAAAGGAGAGGATGAAAAATTCGTAGTAAACAGAAAAGGAAATGCATCCCCAGGTGCTATATATGATCTACCATCTTCCGATTCAGAAAATAATTGTAGTGGTGTTCTATCTTCAGATTCTGCACCTTCAGACAAGATTCTTGCTCGCAGTGAGCCCAATAATCAGTTTCCTGTTACTTCTACATCATATATATCAGAGCATGTTGTTGCCGATTTTGCTTCTAATGGCCCTACGTTATCGCCGAGTTCTTCCTTGTGTTCATTATCTTCTGAAAAGTCAACCCTGAATCCAAATGCCAAGGAGTTTAAGCTGAATCCAAACGCCAAAAGCTTTACCCCTTCATCTTTATTTCGACCTTCTGTGCCATTGTCTGAAGGTTCCTTTTATTACACCAATACAGTGCCAACAATACCTCCTATGCAAAGCTTGCCTATGGGTGTTGCGATTGGACCACCATTTGGCGCACACCAAACTGTTTACAATCCTCAGGCCCCTCCATTACAATCCCCTCCGTTCATTCAGGCTAATGGTCCTGTGTATGGTGCACAAATGCTTGTTGGTCAACCTCAACCTTTTTACTACATGCCGACCTATCCACCTGACATGCCTTTCAAAGGAAGAAACTTCTAATAACATGAATGTGATGACAAACTATGCATTGGAGAGACTCTTAGCCTCTTCTGCATTTGAGAGATGAGAAGCAATAACTTACTGCATTGACTTCCATGCAGGATTCAACGTAACATGATTTTTCTTCTGTATATGTAAATTATAATTGCTGCTGCCTTTTAGCTGCTTTGTCTGTGTACTTCGGATTCCAGATGAAATCTGTAACTCCTTTTTTATATATTTGCGGTGTGTTTTCAAGTGAAAAATAGGAGGCGATCTATTGCTTTTTTCAATATATTTATTCATCTTTTTTTTAGCATTTTTTATTGTTTTTGATCCAAATAATATTGCTAGCTTTATAGTCACCAGAAGCATTTCATCTAATCTATAAGATATAGCA

Network for GWHGAAEX015399

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14438.5	SM-ATX	60	141	9.00E-25
PF06741.12	LsmAD	217	287	1.90E-25
PF07145.14	PAM2	510	521	0.00026
PF07145.14	PAM2	521	534	0.00031

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	30.850
SRP064423	SRR2545915	Juvenile tuber	36.230
SRP108465	SRR5643513	five period of Gastrodia elata	22.300
	SRR5643514	five period of Gastrodia elata	23.000
	SRR5643515	five period of Gastrodia elata	25.040
	SRR5643524	five period of Gastrodia elata	24.330
	SRR5643525	five period of Gastrodia elata	22.390
	SRR5643528	five period of Gastrodia elata	26.550
	SRR5643658	five period of Gastrodia elata	29.290
	SRR5643659	five period of Gastrodia elata	19.840
	SRR5643660	five period of Gastrodia elata	23.510
	SRR5643661	five period of Gastrodia elata	19.600
	SRR5643662	five period of Gastrodia elata	22.020
	SRR5643663	five period of Gastrodia elata	20.660
	SRR5643664	five period of Gastrodia elata	20.350
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	30.160
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	28.520
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	28.950
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	27.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	30.180
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	26.620
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	29.970
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	29.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	29.650
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	31.240
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	31.240
SRP279888	Gastro	Gastrodia elata tuber	30.55
	Juven	Juvenile tuber	34.33
	Mother_Gastro	Mother tuber of Gastrodia elata	27.75
	Mother_Juven	Mother tuber of Juvenile	32.24