Detail information of GWHGAAEX015406/evm.TU.scaffold_66.83
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|295696884|ref|YP_003590122.1| | 0 | threonyl-tRNA synthetase [Kyrpidia tusciae DSM 2912] |
| KOG | KOG1637 | 0 | Threonyl-tRNA synthetase |
| nr | gi|743766255|ref|XP_010913364.1| | 0 | PREDICTED: threonine--tRNA ligase, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|O04630|SYTM_ARATH | 0 | Threonine--tRNA ligase, mitochondrial (Precursor) |
| trEMBL | tr|W1NRC6|W1NRC6_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERM99526.1} |
| TAIR | AT5G26830 | 0 | Threonyl-tRNA synthetase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000073 | 3007806 | 3062877 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015406
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02824.20 | TGS | 84 | 144 | 2.70E-10 |
| PF07973.13 | tRNA_SAD | 227 | 276 | 5.60E-13 |
| PF00587.24 | tRNA-synt_2b | 380 | 586 | 3.80E-39 |
| PF03129.19 | HGTP_anticodon | 598 | 687 | 1.30E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01868 | TARS, thrS | Aminoacyl-tRNA biosynthesis | map00970 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006418 | Biological Process | tRNA aminoacylation for protein translation |
| GO:0006435 | Biological Process | threonyl-tRNA aminoacylation |
| GO:0043039 | Biological Process | tRNA aminoacylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004812 | Molecular Function | aminoacyl-tRNA ligase activity |
| GO:0004829 | Molecular Function | threonine-tRNA ligase activity |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 85.950 |
| SRR2545915 | Juvenile tuber | 68.700 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 66.680 |
| SRR5643514 | five period of Gastrodia elata | 67.190 | |
| SRR5643515 | five period of Gastrodia elata | 59.020 | |
| SRR5643524 | five period of Gastrodia elata | 60.780 | |
| SRR5643525 | five period of Gastrodia elata | 53.230 | |
| SRR5643528 | five period of Gastrodia elata | 42.330 | |
| SRR5643658 | five period of Gastrodia elata | 53.900 | |
| SRR5643659 | five period of Gastrodia elata | 91.800 | |
| SRR5643660 | five period of Gastrodia elata | 76.990 | |
| SRR5643661 | five period of Gastrodia elata | 71.320 | |
| SRR5643662 | five period of Gastrodia elata | 108.060 | |
| SRR5643663 | five period of Gastrodia elata | 103.210 | |
| SRR5643664 | five period of Gastrodia elata | 112.680 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 75.390 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 63.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 73.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 82.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 87.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 91.520 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 88.500 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 79.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 79.280 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 79.840 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 75.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 75.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 79.54 |
| Juven | Juvenile tuber | 82.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 45.75 | |
| Mother_Juven | Mother tuber of Juvenile | 55.21 |