Gene detail

Detail information of GWHGAAEX015407/evm.TU.scaffold_66.86

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4248	2.00E-62	Ubiquitin-like protein, regulator of apoptosis
nr	gi\|672164297\|ref\|XP_008802020.1\|	7.72E-162	PREDICTED: large proline-rich protein BAG6 isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q9SII8\|DSK2B_ARATH	3.00E-08	Ubiquitin domain-containing protein DSK2b
trEMBL	tr\|A0A061GVZ5\|A0A061GVZ5_THECC	1.00E-145	Ubiquitin-like superfamily protein, putative isoform 1 {ECO:0000313\|EMBL:EOY31279.1}
TAIR	AT5G42220	2.00E-62	Ubiquitin-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000073	3129181	3201959	+

Transcript Sequence
>GWHTAAEX015407 GAGATTTCTGATAGAATTGAAACAGACCCTTGATGTTTTGTTCTTTTAACGTGAAAAGGCTTTTGCGAAGAGCCGAGGCGAAGAGCCGAGGCGAAGAGGGATTTAGGGTTCTTCTTCGGCGAGCCCGATCTTCTCCTAATCTTGAATCAAATCTCTTGCAGCACGATCAATCGAACCTTCTCCTCCCACGATTGTCCTCTTCTGCGTGCACGATCAAGCTTTCGGTGTTGTAGATACGTTTGGGTCGAAGACCGCAGAGGTTAGTTTTTGTCAGGCTGGTGCCCTTTATACCTCTTTGTACATCAACCAAGAATGGGAACCACCGGTGCTACTCAAATTCCTATGGGAAATAGTGACATTGCTGATGATTCTGAGACGACTGTTGAAATTAAAATTAAAACTTTGGATTCTCAGACATACACCATACGAGTTAATAAATGTGTACCAGTTCCAGCTCTCAAAGAACAGATTGCTATCGTAACAGGTGTGCTATCAGAACAACAGCGTTTAATATGCCGAGGCCGGGTTTTGAAAGATGATGAGCTCCTTTCTGCTTATCATGTTGAAGATGGTCATACACTGCATCTTGTTGTCAGACAGCCTCACCATTCGTCATCTACATTTGTTGGTTCAGAAGGCCAATCTGCTAATTCTTCTCTAGATAACATACCAAATCATTCCAATCAGGTTTCTCGTACTGTTGTTCTTGAAGCTGTAAACATAGATCAGGCCGATATGAATCCTACCTTCCTTAATCGGATTATGGCAAATATTCTTAATTCTTTTGGTCCAGCTAATAATGGAAGTGGCAATGCTATCACTAATAATCGGGATGGACATTCAGAAAGGCTTCCAAGATCATTTGGTGACACTGGAGTTTCGGGCAGTCAAAATCAGCCAAACAGTACATCTCAAATCAGTCAGAATATGCTAAATATTACTTCTCAAAGAATAGACTCTGAAAGGCAACATGCAGATTTCCAATTCCCAAGTGCAGTTTCCTCAGGACCCCAGAACTTACCAGCAATTCCACACTCCTTAACTACTCTACATCAATATTTGGCCCATTTGAAGAATGCGCTCAGAAGAGAGATATCTGGCTCTAATGATAGAGATAATAATAGCAGTGAAGAAGCTTCAACAGCACATCATAATGAAGGTGGAGACTACTATATCTCTCAATCTCATCATTCTTCCAGGAGAGATGATCTACCCAGTCCTGCAGCGCTAGCAGAAATTTTGCAGTTGACCCAGCATCTGTTAGCAGAGCATGTTGAAATACGTTTGCTTGGACTTGCTAGAGAACTGGAGAATGATACAAATATAACAGATTATTTAATGCGGCTGAACGTCCAATCTAGTGCTATTAGAACTGGGTATTTTCTACAGAACTTTGGCTCATTGCTGCTTGAGCTTGGTCGCACAACGATGACACTGCGTATGGGACAAGTACCAAGTGAAGCTGTTGTTAATTCTGGACCTGCAGTTTTTATATCTGCATCTGGGCCAAACCCTGTGATGGTGCAGCCTGTTCCTTTCTATCCAGCACCAAGTTTTGGAGGGATGAACACAGGACCTACATTTTCTGATCATGTTCCTGAGGGTGAACGTGTTGGTTCTTCATCTTTTCCTAGAAACATTGATATTCGAATCCACGCAGTTCCTATTCCTGCTTCTATGCAAACTGGGCTGGGAGGTTCACGACAACAGCAAGAAAATTTGAATTCAACAAGGACTTCTGCCGGTGCTGATTCTATAAATCAACCAGTTCAAGGTCAGGCACGCGGTCCAACTTTGACAGGAGAATATGGATTAAGAGTAGTACCTGTAAGAACTGTTGTGGCAATGCCTGCTGCAATTAGCAATTCACAAGCCAATTTACCTGGCAACTTGGTTCCATTGCTGCATCCTTTATTATCTAGAGTCCAACAACAAAATGGTGGCAGTGTAAATGAAGTGTTGACTCCCCAAGCATTTTCTGTTCATCAGGGTAGCATTGAAGCCAATCAAGAGCCTATTCCTGATTCTGTGAGACAAATCTTAGAATCCTATGTCAGGGGCTCTGTACAGGAGGAGACTCAGGCTGGATCCTACTCAATGCCTACAGATTCTGGACCAAATATATTATTAACTGCACAAAATGAGCTTCAAGGAACTGTCTATGTTACAAGCCAACATTTGTTTAATGGTTATAATGAGACGAGCTCTCATGTAAATGATGACAATGATCCTGGCCAAGCGCCTTTGCCCCAAAATCCGAACATTTTGAATCATTCTTCTACTACAGTGCTTGTTGGGGATCAAGCAAATACTGTGGGTGTTGAGCTGCAGGGTTCAACTCTTGGTTCCCAAACAGAAGAGGCAAGTGCAGAAGGAGATGCTGATTTCAGCAATGCATCAATATCTATCAATGATCAGGGGGTGTTATTCTCAAATTTCCTTCGCCAGCTAATGCCGTTATTAGCACATGACTCAGCTATATCCCAAGATGCTTCTAGTGTTCCTTCAAATTCGATAACCTTAGAAAGGGTAGATTTGAATGACCCAAGCAGTTCTCAACATCCGAGAGATTTTTCTGAACTACCAAGTTCAAAGCGGCATAAGAGGGAATGAGCAGGCTTCATTCATCATTAAGCATGCACCAAAATCTCGGACTTCGGGCAAGTAATTGTTTGTAAGACAGAAAATGGCCACCTAAGAAATGAGGACTTCAAACTGCAGTGAAGAATGGGAGATTAATGGGTGAAAGATTATTCTTTCTTTGTTTTTAGGGTTCTTAGTATTTAAATTTTAGATTCTAAGCTTCTATAGTTCACATTTGAGATTAGTAGTCTTGTTCATCTCTACATAGAAGCTTGTTAGATTTATGTTGTGTTCTTTAAATTGGCCAATTTAAACTACCATGTATTAAATAGTAGTATGAATAGGATGTTTTCCCTATGTGAGATGTCTTTGTGTATGTTTGGGGAGAGAGGGAGAGATTGAATACTTGGTATCTATTCATTTGTATAATAAAAGATGACATTAGCAAAGAGTAATTCTAGCATCTTTCTTTCTCTCTAGTGAGTAGTAGTGGGATTTGAGCTTCCAATTTTCATTGATCACTATCCAATTTTATATTAAGGTTATG

Network for GWHGAAEX015407

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00240.22	ubiquitin	26	96	1.70E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	107.200
SRP064423	SRR2545915	Juvenile tuber	112.970
SRP108465	SRR5643513	five period of Gastrodia elata	58.320
	SRR5643514	five period of Gastrodia elata	54.580
	SRR5643515	five period of Gastrodia elata	56.210
	SRR5643524	five period of Gastrodia elata	56.150
	SRR5643525	five period of Gastrodia elata	55.590
	SRR5643528	five period of Gastrodia elata	50.830
	SRR5643658	five period of Gastrodia elata	61.890
	SRR5643659	five period of Gastrodia elata	66.160
	SRR5643660	five period of Gastrodia elata	71.910
	SRR5643661	five period of Gastrodia elata	65.460
	SRR5643662	five period of Gastrodia elata	70.050
	SRR5643663	five period of Gastrodia elata	71.510
	SRR5643664	five period of Gastrodia elata	76.110
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	52.710
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	73.790
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	48.360
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	54.980
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	41.070
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	42.840
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	38.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.690
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	38.440
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	53.570
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	53.570
SRP279888	Gastro	Gastrodia elata tuber	67.73
	Juven	Juvenile tuber	113.62
	Mother_Gastro	Mother tuber of Gastrodia elata	66.95
	Mother_Juven	Mother tuber of Juvenile	99.85