Detail information of GWHGAAEX015409/evm.TU.scaffold_66.88


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|218884477|ref|YP_002428859.1|2.00E-3230S ribosomal protein S17P [Desulfurococcus kamchatkensis 1221n]
KOGKOG17285.00E-9440S ribosomal protein S11
nrgi|672161715|ref|XP_008800685.1|3.54E-102PREDICTED: 40S ribosomal protein S11-like [Phoenix dactylifera]
Swissprottr|Q9M5M1|RS11_EUPES2.00E-9540S ribosomal protein S11
trEMBLtr|K3YAH3|K3YAH3_SETIT2.00E-102Uncharacterized protein {ECO:0000313|EnsemblPlants:Si011215m}
TAIRAT3G489305.00E-94Nucleic acid-binding, OB-fold-like protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007332617123269819+
Transcript Sequence

Network for GWHGAAEX015409

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16205.4Ribosomal_S17_N4729.30E-33
PF00366.19Ribosomal_S17741422.00E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02949RP-S11e, RPS11 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms243.590
SRR2545915Juvenile tuber415.500
SRP108465SRR5643513five period of Gastrodia elata449.550
SRR5643514five period of Gastrodia elata562.320
SRR5643515five period of Gastrodia elata445.680
SRR5643524five period of Gastrodia elata494.720
SRR5643525five period of Gastrodia elata271.780
SRR5643528five period of Gastrodia elata312.780
SRR5643658five period of Gastrodia elata232.300
SRR5643659five period of Gastrodia elata390.310
SRR5643660five period of Gastrodia elata330.710
SRR5643661five period of Gastrodia elata401.810
SRR5643662five period of Gastrodia elata347.740
SRR5643663five period of Gastrodia elata332.500
SRR5643664five period of Gastrodia elata325.640
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1369.110
SRR6049655Rhizomagastrodiae_C368-T10_good_1639.280
SRR6049656Rhizomagastrodiae_C368-T07_good_1461.280
SRR6049657Rhizomagastrodiae_C368-T07_good_1364.180
SRR6049658Rhizomagastrodiae_C368-T04_good_1317.790
SRR6049659Rhizomagastrodiae_C368-T04_good_1278.710
SRR6049660Rhizomagastrodiae_C368-T01_good_1365.190
SRR6049661Rhizomagastrodiae_C368-T04_good_1360.980
SRR6049662Rhizomagastrodiae_C368-T01_good_1466.330
SRR6049663Rhizomagastrodiae_C368-T01_good_1412.500
SRR6049664Rhizomagastrodiae_C368-T10_good_1569.790
SRR6049665Rhizomagastrodiae_C368-T10_good_1569.790
SRP279888GastroGastrodia elata tuber 469.28
JuvenJuvenile tuber414.10
Mother_GastroMother tuber of Gastrodia elata 221.44
Mother_JuvenMother tuber of Juvenile 211.53