Gene detail

Detail information of GWHGAAEX015415/evm.TU.scaffold_66.98

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428218875\|ref\|YP_007103340.1\|	1.00E-11	WD40 repeat-containing protein [Pseudanabaena sp. PCC 7367]
KOG	KOG4328	8.00E-127	WD40 protein
nr	gi\|743822254\|ref\|XP_010932229.1\|	3.32E-170	PREDICTED: WD repeat-containing protein 76 [Elaeis guineensis]
Swissprot	tr\|P93107\|PF20_CHLRE	7.00E-07	Flagellar WD repeat-containing protein Pf20
trEMBL	tr\|K4B4P5\|K4B4P5_SOLLC	2.00E-145	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g014460.2.1}
TAIR	AT1G80710	8.00E-127	DROUGHT SENSITIVE 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000073	3618172	3622341	-

Transcript Sequence
>GWHTAAEX015415 CGATGGCGTCCGAGAAAACCCTAACGGATTACGAAAGCCGACGGCTGGAGAACATCCGCCGGAACGGCGAGATGATTGCAGCCCTCATGCTTCAATCCAAAGCCTCCGAGCTATCGTCTTCCCTCAAGCGCGCCGGCTCCAAGTCCTCCAACTCCCTCTCCCAAACAAAGAAGATCAAAATGTCCCCTCCTCGTTCTCCAATCGTCATCCGTCGCTCCCTTCGCACCCGCGGCCTTCCTCCGAATCACTCTGCCAACCCTTTAACACCAACCGATTCCTTGCCAATCCCTTCTTCGCCGAAGCCTACTTTCTCCCCTCCGCGTAAGCGCAACCAGATCCACATCACTGACGCATTCCTCGCCGACAGCGATGCTTCTGATCGCCCTCTCATTGACGCCGTGTTGTCCGCCGCTGCTGCAGAAGGTGATGGCTGGTCGAAGTCAAATCTGTTGGAGGATTGCGAGTTCGATCCCAGGCATTCGATGCTGCTGATGCCAGGGAATGTGGCGAAGGTTGTTCCGGACCGTATTCTTAGCGTCCAGTTCTTACCCTCTGCTAATCGAACTGTAGTTGCTGCGGGGAACAAGCTGGGAAATGTTGGGTTATGGGATCTGGATTTTGGGGGAGATCAAGAGAACGGGGGCGATATTGGAGTTTATGTTTACGCCCCTCATTCTGCTCCGGTTTCAGCGCTCTCTTTTCATCCCTCGAGCATGAATCAGATGCTTACAGGCAGCTATGATGGCTTAATCCGCAACATGGATTTTGAGAAAGAAACCTTCAATGTGATGTATTCCACAAAGAACTGCATCTTTTCTCTTTGTCAGTGGACACATGACTTCAATTCCCTTTTCATTGGTGTGGGAGCTGGTGTTCTTAAGCTTTGCGATGAGAGGGCTGGCAAGGATTTAAGCGAATGGAACCTGCATGATGATAGAATCAATACAATAGACTTCAGTCCAGAAAATTGCTATTTAATGGCCACAAGTTCTACGGATGGAACAGCTTGTATTTGGGACGTAAGAAGTATGACGAAACATCAACCAGAGCCGCTTAATGCTGTTCGCCATAAAAGAAGCGTTCAGTCTGCCTATTTCTCTCCCACCGGAAGCTATCTTGCAACAACAAGCCTTGACGACCGAGTTGGAATCATCAGTCTTTCTCAGTTCAAAGATGCATCTATGATTCACCACAACAACCGGACTGGCAGATGGCTGTCAACATTCAGGGCTATCTGGGGATGGGACGACTCGTTCGTGTTTCTCGGAAATATGAGAAGAGCTGTTGATGTCATCTCTATGGCGAGCAAAACGACGACGGCCTTGGAGAGCCCGGAGATGACTTCGATCCCTTGCCGTTTAGCCGCCCACCCGCTTAAAGTCGGCACTCTCGCTTGCGCCTCTCGTGGCAAGGTCTATTTGTGGACAGAGGGCGTAAATTGAAAGTTTCCTCATATGGGAATCCTCCTGCTATGTATGTACATGCAACTCCTATGCTTTTCCAGTGCATTTCACCTTTTTGGGGGCTCAAAACGCTCATATTGTGTGCATCTTGTTTTAGAAACGAATAGGTTGCATATCGAAGGCACTTTAGAATTGGCGCTGCATTTTGGCTTCTGCCACTTGTTCTTTCCCACTTTGATTTTATTTGCCCACAATTCTGAATGCGCATTCACCATTTGCTTAATTACTTAACTTTAAATGAATTCACGTGCTGTTAATGATTGAACTTTATGCTGAGTTGAAAAATTTAGCCAAATTTTATGATCTAAATAAAATAGTCACATCAAGGGATGTTTATTCCAAATGGAGATGAAAGTCTGGATACCTTTGCTCAAATTGAACACTAATGGGTGGACATGACGAAGACGTCCTTGCAGATATAGAAAGAGTGCCTGGTTTTGATGAGCTGCGGAGAGAAAAAAATCCAAATCCAAACCCTTAGCTTTCAATGTCAAGAAGGTTCTTACCATAAGTTTTATATTTTTATTTTTTTTCTTAGTTTGTTTTTGTAGTCGGCTAAGCAATGGAAATTATGTAATGAATTCTGTATGAAGTAGTTTGTCTGTAGCACAGGATGTATTTTTTGCTAATGGTCAATGGATGTTTAAGATTGTTC

Network for GWHGAAEX015415

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	309	339	0.00063

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.040
SRP064423	SRR2545915	Juvenile tuber	0.610
SRP108465	SRR5643513	five period of Gastrodia elata	1.920
	SRR5643514	five period of Gastrodia elata	1.900
	SRR5643515	five period of Gastrodia elata	0.930
	SRR5643524	five period of Gastrodia elata	1.750
	SRR5643525	five period of Gastrodia elata	0.420
	SRR5643528	five period of Gastrodia elata	0.600
	SRR5643658	five period of Gastrodia elata	0.220
	SRR5643659	five period of Gastrodia elata	0.970
	SRR5643660	five period of Gastrodia elata	1.090
	SRR5643661	five period of Gastrodia elata	0.670
	SRR5643662	five period of Gastrodia elata	0.530
	SRR5643663	five period of Gastrodia elata	0.860
	SRR5643664	five period of Gastrodia elata	0.490
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.010
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.800
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.650
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.490
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.120
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.920
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.570
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.280
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.470
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.550
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.550
SRP279888	Gastro	Gastrodia elata tuber	0.39
	Juven	Juvenile tuber	0.44
	Mother_Gastro	Mother tuber of Gastrodia elata	0.04
	Mother_Juven	Mother tuber of Juvenile	0.17