Detail information of GWHGAAEX015416/evm.TU.scaffold_66.100
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2062 | 0 | 26S proteasome regulatory complex, subunit RPN2/PSMD1 |
| nr | gi|694997044|ref|XP_009397304.1| | 0 | PREDICTED: 26S proteasome non-ATPase regulatory subunit 1 homolog A-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O48844|PSD1A_ARATH | 0 | 26S proteasome non-ATPase regulatory subunit 1 homolog A |
| trEMBL | tr|M0RYR4|M0RYR4_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P10550_001} |
| TAIR | AT2G32730 | 0 | 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000073 | 3687587 | 3724275 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015416
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01851.21 | PC_rep | 492 | 525 | 1.60E-05 |
| PF13646.5 | HEAT_2 | 616 | 707 | 2.10E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03032 | PSMD1, RPN2 | Proteasome | map03050 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042176 | Biological Process | regulation of protein catabolic process |
| GO:0030234 | Molecular Function | enzyme regulator activity |
| GO:0000502 | Cellular Component | proteasome complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 86.040 |
| SRR2545915 | Juvenile tuber | 113.730 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 75.100 |
| SRR5643514 | five period of Gastrodia elata | 77.840 | |
| SRR5643515 | five period of Gastrodia elata | 74.910 | |
| SRR5643524 | five period of Gastrodia elata | 80.730 | |
| SRR5643525 | five period of Gastrodia elata | 61.750 | |
| SRR5643528 | five period of Gastrodia elata | 75.230 | |
| SRR5643658 | five period of Gastrodia elata | 76.730 | |
| SRR5643659 | five period of Gastrodia elata | 91.650 | |
| SRR5643660 | five period of Gastrodia elata | 90.380 | |
| SRR5643661 | five period of Gastrodia elata | 89.710 | |
| SRR5643662 | five period of Gastrodia elata | 94.490 | |
| SRR5643663 | five period of Gastrodia elata | 96.340 | |
| SRR5643664 | five period of Gastrodia elata | 90.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 71.310 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 73.150 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 77.350 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 74.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 70.530 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 76.200 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 75.970 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 77.710 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 86.390 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 79.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 79.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 79.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 105.39 |
| Juven | Juvenile tuber | 124.38 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 77.89 | |
| Mother_Juven | Mother tuber of Juvenile | 137.19 |