Detail information of GWHGAAEX015417/evm.TU.scaffold_66.101
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672124158|ref|XP_008785452.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g39620 [Phoenix dactylifera] |
| Swissprot | tr|O80647|PP195_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g39620 |
| trEMBL | tr|A5ADX7|A5ADX7_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN82070.1} |
| TAIR | AT2G39620 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000073 | 3770560 | 3773349 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015417
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 70 | 117 | 4.60E-10 |
| PF12854.6 | PPR_1 | 146 | 168 | 1.20E-07 |
| PF01535.19 | PPR | 175 | 204 | 8.50E-05 |
| PF01535.19 | PPR | 245 | 265 | 0.18 |
| PF13041.5 | PPR_2 | 272 | 312 | 3.70E-07 |
| PF13041.5 | PPR_2 | 373 | 421 | 1.60E-08 |
| PF13041.5 | PPR_2 | 474 | 522 | 5.80E-08 |
| PF13041.5 | PPR_2 | 582 | 625 | 1.60E-08 |
| PF13041.5 | PPR_2 | 682 | 730 | 1.80E-10 |
| PF01535.19 | PPR | 758 | 784 | 0.0074 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.060 |
| SRR2545915 | Juvenile tuber | 1.710 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.670 |
| SRR5643514 | five period of Gastrodia elata | 1.990 | |
| SRR5643515 | five period of Gastrodia elata | 1.960 | |
| SRR5643524 | five period of Gastrodia elata | 1.750 | |
| SRR5643525 | five period of Gastrodia elata | 1.380 | |
| SRR5643528 | five period of Gastrodia elata | 0.630 | |
| SRR5643658 | five period of Gastrodia elata | 0.560 | |
| SRR5643659 | five period of Gastrodia elata | 3.760 | |
| SRR5643660 | five period of Gastrodia elata | 4.130 | |
| SRR5643661 | five period of Gastrodia elata | 3.740 | |
| SRR5643662 | five period of Gastrodia elata | 4.210 | |
| SRR5643663 | five period of Gastrodia elata | 3.110 | |
| SRR5643664 | five period of Gastrodia elata | 3.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.700 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.010 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.570 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.600 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.290 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.800 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.980 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.060 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.610 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.380 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.630 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.630 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.50 |
| Juven | Juvenile tuber | 2.35 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.02 | |
| Mother_Juven | Mother tuber of Juvenile | 2.04 |