Detail information of GWHGAAEX015418/evm.TU.scaffold_66.102


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG36773.00E-145RNA polymerase I-associated factor - PAF67
nrgi|672107223|ref|XP_008800463.1|0PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Phoenix dactylifera]
trEMBLtr|K3XGL2|K3XGL2_SETIT0Eukaryotic translation initiation factor 3 subunit L {ECO:0000256|HAMAP-Rule:MF_03011}
TAIRHS77054333.00E-145Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000007337785053791627-
Transcript Sequence

Network for GWHGAAEX015418

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10255.8Paf671185143.50E-146
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003743Molecular Functiontranslation initiation factor activity
GO:0005852Cellular Componenteukaryotic translation initiation factor 3 complex
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms93.510
SRR2545915Juvenile tuber86.240
SRP108465SRR5643513five period of Gastrodia elata59.960
SRR5643514five period of Gastrodia elata54.460
SRR5643515five period of Gastrodia elata54.990
SRR5643524five period of Gastrodia elata57.880
SRR5643525five period of Gastrodia elata31.440
SRR5643528five period of Gastrodia elata37.210
SRR5643658five period of Gastrodia elata31.650
SRR5643659five period of Gastrodia elata68.150
SRR5643660five period of Gastrodia elata81.240
SRR5643661five period of Gastrodia elata80.500
SRR5643662five period of Gastrodia elata67.440
SRR5643663five period of Gastrodia elata63.380
SRR5643664five period of Gastrodia elata60.840
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_170.850
SRR6049655Rhizomagastrodiae_C368-T10_good_167.920
SRR6049656Rhizomagastrodiae_C368-T07_good_174.480
SRR6049657Rhizomagastrodiae_C368-T07_good_171.350
SRR6049658Rhizomagastrodiae_C368-T04_good_171.350
SRR6049659Rhizomagastrodiae_C368-T04_good_179.000
SRR6049660Rhizomagastrodiae_C368-T01_good_177.640
SRR6049661Rhizomagastrodiae_C368-T04_good_172.080
SRR6049662Rhizomagastrodiae_C368-T01_good_184.990
SRR6049663Rhizomagastrodiae_C368-T01_good_187.310
SRR6049664Rhizomagastrodiae_C368-T10_good_175.480
SRR6049665Rhizomagastrodiae_C368-T10_good_175.480
SRP279888GastroGastrodia elata tuber 76.82
JuvenJuvenile tuber99.40
Mother_GastroMother tuber of Gastrodia elata 40.98
Mother_JuvenMother tuber of Juvenile 60.53