Detail information of GWHGAAEX015430/evm.TU.scaffold_66.117
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383460004|ref|YP_005373993.1| | 2.00E-61 | cation diffusionfacilitator family transporter [Corallococcus coralloides DSM 2259] |
| KOG | KOG2802 | 6.00E-172 | Membrane protein HUEL (cation efflux superfamily) |
| nr | gi|743812082|ref|XP_010929326.1| | 0 | PREDICTED: metal tolerance protein C4-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q8H1G3|MTPC4_ARATH | 0 | Metal tolerance protein C4 |
| trEMBL | tr|M0SC31|M0SC31_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P05630_001} |
| TAIR | AT1G51610 | 6.00E-172 | Cation efflux family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000073 | 4438931 | 4506292 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015430
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01545.20 | Cation_efflux | 109 | 310 | 7.30E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006812 | Biological Process | cation transport |
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0008324 | Molecular Function | cation transmembrane transporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 27.020 |
| SRR2545915 | Juvenile tuber | 18.240 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.940 |
| SRR5643514 | five period of Gastrodia elata | 18.650 | |
| SRR5643515 | five period of Gastrodia elata | 15.410 | |
| SRR5643524 | five period of Gastrodia elata | 18.040 | |
| SRR5643525 | five period of Gastrodia elata | 20.820 | |
| SRR5643528 | five period of Gastrodia elata | 19.660 | |
| SRR5643658 | five period of Gastrodia elata | 24.950 | |
| SRR5643659 | five period of Gastrodia elata | 16.060 | |
| SRR5643660 | five period of Gastrodia elata | 14.580 | |
| SRR5643661 | five period of Gastrodia elata | 13.720 | |
| SRR5643662 | five period of Gastrodia elata | 15.490 | |
| SRR5643663 | five period of Gastrodia elata | 15.610 | |
| SRR5643664 | five period of Gastrodia elata | 18.290 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.200 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.910 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 18.280 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.090 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.970 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.070 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.270 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.270 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.79 |
| Juven | Juvenile tuber | 14.92 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.09 | |
| Mother_Juven | Mother tuber of Juvenile | 12.96 |