Gene detail

Detail information of GWHGAAEX015432/evm.TU.scaffold_66.120

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0401	Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G)
nr	gi\|743864597\|ref\|XP_010904622.1\|	PREDICTED: eukaryotic translation initiation factor isoform 4G-1-like [Elaeis guineensis]
Swissprot	tr\|Q84PB3\|IF4G1_ORYSJ	Eukaryotic translation initiation factor isoform 4G-1
trEMBL	tr\|M0SNE0\|M0SNE0_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P12750_001}
TAIR	AT5G57870	MIF4G domain-containing protein / MA3 domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000073	4588585	4608939	-

Transcript Sequence
>GWHTAAEX015432 CTGGCACGCTATTATGACTTGAGACACCCTTTCTATTTCCGCCCAATAAGCAGCCATAAACTACGGAAACGCCATCATCGCGGCATAAATTGGATCTTCGGCTCCTTTTGACGGCTCTCCTCTTCCAATATTTCTTCTTTTCTTTCCCTTGCGAAAGGGATTCGCGGAGGGTCTTCGTCGTCTGTATCTGCTCGTGAATCGATCACCTGCGGGTGAGATCGCGGTGTTACCTCTGAGGATTTCAGCGAGTTATGCAGGCGGATCAGACGGTGCTTAGCCTAAGGCCTGGTGGTGGCGGCAATCGAGGCATCAGGCTCTTTGTCTCACGCTTCGATTCACCTGTCTTCTCCGGCGCTGGAAGTGTTGCGGCCCTCAGCTCGGCCTCCGACGCACTCGCCTTTCGTGCTCATGGCGGCGCATCCAAGGCTGGAGATTCGCGGTTCGAGGGTCGGGAGCACATACTCTACACCCGGGACCAATTGTTACGACTTCGTGAGGTTTTTGATGTTCCCGAGGAAATTTTAAAAGTAAGAAAAGAGATTGACGTTGAACTTCATGGTGAAGACCAATCTTGGGGTGGAAGTGATGCTAATGCGCAGACCCAATTTCAAAATCGCTACTATGAACAAGATAATCGAGATTGGCGTGGTCGTTCTGGGCAAGTGCCTCCGAGTGGAGGGGACAAGTCGTGGGATACTATTCGTGAGCATAAAGAGTTGCTTGGGTCTAATGCAAAGCTGCAGGATTTGAGCCAACTTCGGCAGGAGCAGTTGAGCACTCAATTTTCTTCCCACCTTCTAGTTTCAACCTCCAAAGGGGGTGGACCTGCTACCGCACTTCTTAAAGCCGAAGTGCCATGGTCTGCACGTAGAAGCATCCTCTCTGAGAATGAAAGAGTCCTTAAAACAGTCAAGGGCATCTTGAATAAGCTGACACCAGAAAAGTTCGATGTTCTCAAGGGCCAGCTTATTGATGCCGGAATAACTACTCCTGAAATTTTAAAGGGCGTGATCTCTCTGATATTTGATAAAGCAGTTTTGGAGCCTACCTTCTGTCCCATGTACGCCCAGCTGTGTTCTAATCTCAACGAAGGCATCCCTCCGTTCCCTGCAGAGGAACCTGGTGGGAAGGAGATCACTTTTAAGCGCCTTCTGCTGAATATATGCCAGGAGGCATTTGAAGGCTCCGACAATCTTAGATCCGAAATCAGCAAGTTAACTGGCCCCGACCAGGAGATGGAGCGCAGGGACAAAGAGAGGATGGTCAAGCTTCGAACCCTTGGAAACATACGCCTGATTGGTGAACTCCTGAAGCAGAAGATGGTTCCCGAGATGATTGTCCATCATATTGTCCAGGAGCTACTTGGGCCGGACATTAAAGCATGCCCTGCAGAGGAGAATGTGGAGGCCATATGCCAATTTTTCAACACCATTGGCAAACAGTTGGATGAGAATCCGAAGTCGCGACGCTTCAATGATGCCTATTTTATCCGGCTGAAGGAGCTCACGACCAATCTTCTGCTTGCTCCGCGCCTGAGGTTTATGGTCCGCAATGTGCTCGATCTTCGTACTCACCAATGGGTTCCCCGCCGTGAAGAGGTGAAAGCAAAAACCATTTCTGAAATCCATTCGGAGGCAGAGAAGACTCTAGGGCTGCGTCCTGGTGCAACTGCGAACATGAGGAATGGGCGCAGTGCTGGCAGTGGTTTGGGCGGCGTGAACCCTGGGGCTGGGCAATCCCTGAAGCCTCCCGGAACTGGAGGCATGATGATGCCCGGGATGCCCGGAATGAGAAAGATGCCGGGGATGCCTGTGATGGATGGCGATTGGGAGATGGTTCCTCGCTCCAAATCTTTGCTCAGAGGCGGACAGCAGACCCCTCTTCTCAGCAAGTCGTCTCCCATAAATTCCAAGCTGCTGCCTCAGGGAAGCGGCGGCCTGTTGGCTGGTCGATCGAGCGCTCTGCTGCAGGGCAGCGGCAATCCTCTGCCTTCCCAGCGGCCTACCATCCTTCCTGCTTCGGAGATCGACGTCTCTCAGAATGCCGGCCCGGCAAAGCTGCCTCCCGCAGCTCAGCAATCCGCCACTTCCGAGACACAAGCTGCTGGGAGAATCACGGACCCCGCCATGCTGCGCAAGAAGACCATTGCCCTGTTGGAGGAGTATTTCCATGTGGGCATACTGGACGAGGCGCTGCTGTGCGTGGAGGACCTCAAGAACCCGCAGTACCACCCGGAGGTCGTCAAGGAAGCCATCAACTATGGCCTCGACAAGGGCCTTTCCTACCTGAATTCCCTGCTCTTGTTTCTTGAGCACATGCTAACCAAAAAGGTGTTCACGCCTCGAGACCTGGGCACTGGCGTCCTGCTCTACGGATCAATGCTGGATGATGTCAGCATTGACCTGCCCAGAGCGCCATCTCTCTTCGGGGAGGTCATTGGGAAGCTCATCTTGGCTAATGGGATAGTCTTCAAGGTGCTGGAGGATGTCCTGAAGAAGGTGGATGACAATAGGCTCCAGTCCGCTCTTTTCGATGCTGCAATGACCTCATTGCATGGAAGCCCTGCGGGACAGCAGGTATTGGCCAACCACTCTGATGATGTAAAGGCGTGCATGGGCTTGTTTGCTTCCTGAAATTCCACCCCTTTTCTTTCCTTTCCTTCCCTTCCCTTCCCCTCTTGGGTGGACTTGAATCTCTTTGATGTTACTCTGCTTCGTTTCTATTTATTTTTATATATTTTTTGCTTTTGGAATTTTTTTAATATATTTTTTTGAGGTAAAAAACTTTTTTTTTTTTGACAAACTTACGGACGGGCTTTGGAGAAGCTTTTCTTAACAATTTTATTAGTTGTATGTATATTTATGCCAGTGACATTTTCATTAGTTATTAAGCCTTGAAAATGCACTTTGTTTCCTTCGGCTATTAGATGGTCTCATGTAGCATTTGTTGCCAATTGGATCTCTTTGGATTTGGTGATCTGGTTATAGTCTGAAGGCCTTTTATTTTGCTTGGTTGGATATATGTTGTTAGG

Network for GWHGAAEX015432

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02854.18	MIF4G	217	440	1.30E-55
PF02847.16	MA3	627	737	1.00E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03260	EIF4G	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0003723	Molecular Function	RNA binding
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	150.910
SRP064423	SRR2545915	Juvenile tuber	137.520
SRP108465	SRR5643513	five period of Gastrodia elata	169.710
	SRR5643514	five period of Gastrodia elata	164.660
	SRR5643515	five period of Gastrodia elata	149.430
	SRR5643524	five period of Gastrodia elata	151.250
	SRR5643525	five period of Gastrodia elata	177.870
	SRR5643528	five period of Gastrodia elata	173.010
	SRR5643658	five period of Gastrodia elata	166.350
	SRR5643659	five period of Gastrodia elata	238.550
	SRR5643660	five period of Gastrodia elata	225.680
	SRR5643661	five period of Gastrodia elata	230.160
	SRR5643662	five period of Gastrodia elata	256.500
	SRR5643663	five period of Gastrodia elata	247.660
	SRR5643664	five period of Gastrodia elata	286.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	172.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	135.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	161.490
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	183.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	217.720
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	211.750
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	185.580
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	175.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	145.330
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	166.920
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	153.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	153.560
SRP279888	Gastro	Gastrodia elata tuber	246.13
	Juven	Juvenile tuber	274.30
	Mother_Gastro	Mother tuber of Gastrodia elata	190.56
	Mother_Juven	Mother tuber of Juvenile	238.99