Detail information of GWHGAAEX015440/evm.TU.scaffold_67.4
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-157 | FOG: PPR repeat |
| nr | gi|672173277|ref|XP_008806765.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At1g03510 [Phoenix dactylifera] |
| Swissprot | tr|Q9LR72|PPR7_ARATH | 4.00E-158 | Putative pentatricopeptide repeat-containing protein At1g03510 |
| trEMBL | tr|B9RB17|B9RB17_RICCO | 1.00E-171 | Pentatricopeptide repeat-containing protein, putative {ECO:0000313|EMBL:EEF51994.1} |
| TAIR | AT1G03510 | 1.00E-157 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000065 | 85301 | 93511 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015440
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 81 | 106 | 0.46 |
| PF01535.19 | PPR | 110 | 134 | 0.00025 |
| PF01535.19 | PPR | 216 | 241 | 0.17 |
| PF01535.19 | PPR | 243 | 273 | 3.30E-05 |
| PF01535.19 | PPR | 279 | 301 | 0.45 |
| PF01535.19 | PPR | 385 | 408 | 0.097 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.820 |
| SRR2545915 | Juvenile tuber | 0.690 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.850 |
| SRR5643514 | five period of Gastrodia elata | 0.850 | |
| SRR5643515 | five period of Gastrodia elata | 0.910 | |
| SRR5643524 | five period of Gastrodia elata | 0.700 | |
| SRR5643525 | five period of Gastrodia elata | 0.490 | |
| SRR5643528 | five period of Gastrodia elata | 0.510 | |
| SRR5643658 | five period of Gastrodia elata | 0.350 | |
| SRR5643659 | five period of Gastrodia elata | 2.560 | |
| SRR5643660 | five period of Gastrodia elata | 2.190 | |
| SRR5643661 | five period of Gastrodia elata | 2.500 | |
| SRR5643662 | five period of Gastrodia elata | 2.290 | |
| SRR5643663 | five period of Gastrodia elata | 1.820 | |
| SRR5643664 | five period of Gastrodia elata | 1.610 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.370 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.700 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.520 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.390 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.480 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.120 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.410 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.020 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.290 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.480 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.880 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.880 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.05 |
| Juven | Juvenile tuber | 0.78 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.78 | |
| Mother_Juven | Mother tuber of Juvenile | 0.88 |