Detail information of GWHGAAEX015444/evm.TU.scaffold_67.10
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3380 | 3.00E-71 | Actin-related protein Arp2/3 complex, subunit ARPC5 |
| nr | gi|115485903|ref|NP_001068095.1| | 2.97E-80 | Os11g0557900 [Oryza sativa Japonica Group] |
| Swissprot | tr|Q9M117|ARC5A_ARATH | 3.00E-72 | Actin-related protein 2/3 complex subunit 5A |
| trEMBL | tr|B8BL17|B8BL17_ORYSI | 1.00E-80 | Actin-related protein 2/3 complex subunit 5 {ECO:0000256|RuleBase:RU004301} |
| TAIR | AT4G01710 | 3.00E-71 | ARP2/3 complex 16 kDa subunit (p16-Arc) |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000065 | 230446 | 243069 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015444
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04699.13 | P16-Arc | 19 | 133 | 5.60E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05754 | ARPC5 | Endocytosis | map04144 |
| Regulation of actin cytoskeleton | map04810 | ||
| Fc gamma R-mediated phagocytosis | map04666 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030833 | Biological Process | regulation of actin filament polymerization |
| GO:0034314 | Biological Process | Arp2/3 complex-mediated actin nucleation |
| GO:0005885 | Cellular Component | Arp2/3 protein complex |
| GO:0015629 | Cellular Component | actin cytoskeleton |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 31.510 |
| SRR2545915 | Juvenile tuber | 29.870 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 39.470 |
| SRR5643514 | five period of Gastrodia elata | 45.300 | |
| SRR5643515 | five period of Gastrodia elata | 47.120 | |
| SRR5643524 | five period of Gastrodia elata | 45.820 | |
| SRR5643525 | five period of Gastrodia elata | 79.290 | |
| SRR5643528 | five period of Gastrodia elata | 64.700 | |
| SRR5643658 | five period of Gastrodia elata | 78.760 | |
| SRR5643659 | five period of Gastrodia elata | 53.170 | |
| SRR5643660 | five period of Gastrodia elata | 59.480 | |
| SRR5643661 | five period of Gastrodia elata | 59.600 | |
| SRR5643662 | five period of Gastrodia elata | 52.240 | |
| SRR5643663 | five period of Gastrodia elata | 49.450 | |
| SRR5643664 | five period of Gastrodia elata | 53.630 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 65.160 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 33.990 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 69.110 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 62.180 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 97.010 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 80.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 78.010 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 76.380 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 82.800 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 95.250 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 71.560 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 71.560 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 65.72 |
| Juven | Juvenile tuber | 40.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 53.61 | |
| Mother_Juven | Mother tuber of Juvenile | 24.29 |