Detail information of GWHGAAEX015455/evm.TU.scaffold_67.34
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|451823005|ref|YP_007459279.1| | 3.00E-15 | CspA family beta-ribbon cold shock protein [Candidatus Kinetoplastibacterium desouzaii TCC079E] |
| KOG | KOG3070 | 1.00E-20 | Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing |
| nr | gi|694995939|ref|XP_009391215.1| | 1.19E-24 | PREDICTED: cold shock domain-containing protein 3-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P27484|GRP2_NICSY | 2.00E-23 | Glycine-rich protein 2 |
| trEMBL | tr|I1QFC0|I1QFC0_ORYGL | 5.00E-25 | Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA08G0012100.1} |
| TAIR | AT4G36020 | 1.00E-20 | cold shock domain protein 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000065 | 1510483 | 1510755 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015455
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00313.21 | CSD | 11 | 75 | 1.60E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | CSD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.030 |
| SRR2545915 | Juvenile tuber | 3.270 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 20.660 |
| SRR5643514 | five period of Gastrodia elata | 11.770 | |
| SRR5643515 | five period of Gastrodia elata | 9.470 | |
| SRR5643524 | five period of Gastrodia elata | 14.250 | |
| SRR5643525 | five period of Gastrodia elata | 40.490 | |
| SRR5643528 | five period of Gastrodia elata | 46.820 | |
| SRR5643658 | five period of Gastrodia elata | 29.780 | |
| SRR5643659 | five period of Gastrodia elata | 15.710 | |
| SRR5643660 | five period of Gastrodia elata | 10.510 | |
| SRR5643661 | five period of Gastrodia elata | 13.510 | |
| SRR5643662 | five period of Gastrodia elata | 32.160 | |
| SRR5643663 | five period of Gastrodia elata | 17.340 | |
| SRR5643664 | five period of Gastrodia elata | 21.730 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 38.110 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.700 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 27.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 20.110 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 27.110 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 27.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 26.460 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 33.630 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 45.760 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 45.760 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 57.48 |
| Juven | Juvenile tuber | 17.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 123.10 | |
| Mother_Juven | Mother tuber of Juvenile | 41.16 |