Gene detail

Detail information of GWHGAAEX015459/evm.TU.scaffold_67.40

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|289596466\|ref\|YP_003483162.1\|	CTP synthase [Aciduliprofundum boonei T469]
KOG	KOG2387	CTP synthase (UTP-ammonia lyase)
nr	gi\|743797009\|ref\|XP_010924874.1\|	PREDICTED: CTP synthase isoform X2 [Elaeis guineensis]
trEMBL	tr\|K3XFS0\|K3XFS0_SETIT	CTP synthase {ECO:0000256\|RuleBase:RU810713}
TAIR	AT3G12670	CTP synthase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000065	1945561	1954609	-

Transcript Sequence
>GWHTAAEX015459 CGAGCGGGGGCTTGGAAAGGGATAAAAAGCGGAAGTGCTCAAAAATAGGGCATAGGCCATGAGCGATCGAGGTATTTAACTGCGCCTCATCTTCCTCTTTCCCACTCGTTTCCGTTCCTCTCCTCCCGGCTCTCATCGGCGCTCTTCTCGTCTTCCCCGAGCTTTCTTCTGTTCTTCGATCTCTCCTTCAATTTCAGCGGGCTTCTATTCTCACCCTGTCGCTCGCTCTCATCAACTTCATTTGAGCCTTTTGCGTCTCTGTGGGAGAGATTTATAGTGTAAGTGGAGCAGAAAGGAGTGCGTGAGCGATGAAGTATGTGCTGGTAACAGGGGGAGTGGTGAGTGGGCTTGGAAAGGGTGTGACAGCGAGCAGCATTGGGGTGGTACTCAAGGCCTGCGGTCTCCGTGTTACTTCTATCAAGATTGATCCATACCTCAATACCGATGCTGGAACGATGTCCCCTTTTGAGCATGGAGAAGTATTTGTTTTAGATGATGGTGGAGAGGTGGACTTGGATCTTGGCAACTACGAAAGGTTCCTTGACATTAAACTAACTCGTGACAATAACATTACTACAGGAAAGATTTATCAGTTTGTCATTGATAAGGAAAGAAAGGGAGATTATTTGGGGAAAACTGTTCAGGTTGTTCCGCACATTACCGATGCCATACAAGAGTGGATTGAACGTGTAGCAATGATTCCTGTTGATGGAAAAGAAGGCCCTGCTGATGTCTGTGTTATAGAACTTGGTGGAACCATAGGAGACATTGAATCTATGCCATTTATTGAAGCTCTTGGTCAGTTTTCATATCGTGTAGGTCCTGGTAACTTCTGCCTTGTTCATGTCAGCCTTGTGCCAGTTCTAAATGTAGTTGGTGAACAGAAAACTAAACCAACACAGCATAGTGTTCGAGGACTAAGAGGGCTTGGATTAACTCCAAATATTCTTGCTTGCCGCAGTGCATTGCCGTTGGATCAAAATGTAAAGGAAAAGCTTTCACAATTTTGCCATGTTCCGACTGCCAATATTGTAACCCTTTATGATGTCCCAAACATTTGGCATATACCCTTGCTTCTTAGGAACCAGAAGGCTCATAATGCTATCTTGAAAGCACTGAACCTCCACGGCAATACTCGAGAGCCCATGTTGGAGGAATGGACTTCTATGGTTAAAGTCTGTGACAGTCTCCATGTTCCTGTTAGGATTGCCATGGTTGGGAAATATACTGGTCTTTCTGACTCGTACCTTTCTGTATTAAAAGCCCTCCTGCATGCATCTGTTTTCTGCGAAAGAAAGCTCATAGTTGACTGGGTAACTTCGACAGATCTTGAAGAAACAACTGCACAAAAGTCACCCGATGTTCATGCAGAAGCATGGAATCTTCTGAAAGGTGCAGATGGTGTATTAGTTCCTGGAGGTTTTGGTGATAGAGGCATCCAAGGGAAAATCCTTGCAGCAAAGTATGCTCGGGAAAAGAATATACCCTATCTTGGCATTTGTCTTGGCATGCAAATTGCGGTGATTGAATTTGCTCGGAATGTGATAAATTTACAAGATGCTAATAGCACTGAGTTTGATCCTAACACAAAAAACCCATGTGTGATATTCATGCCAGAGTGTTCCAAAACACATATGGGAGGAACGATGAGACTTGGATCTAGGAGGACTTATTTCCATGCTAAGGATTGCAAATCTGCCAGGCTTTATGGAAATGTGGCATTTGTGGATGAAAGGCACAGGCACAGATATGAAGTAAACCCTGATATGGTTATCAAACTTGAAAGGTTCGGCCTTGCTTTTGTTGGAAAAGATGAGAGTGGTAAACGTATGGAGATTGTTGAGCTGCATTCACATTCTTATTATGTTGGTGTCCAGTTCCATCCAGAGTTCAAATCTAGACCTGCAAAACCCTCAGCTGTTTTCGTAGGCTTGATTGCTGCCGCCAGCGGGCAGCTGGACGCGCATTTGAAGGCTGCGGCTCGCGACAACTTGGTGCCGGCGAAACAGCTTGCGAGAAATGGCTTCCCCGCGAAGGTACATCAGTACGCGAAGCGCCTGCCGAACGGTGCGTATTATGCCAACGGCAACGGCGTGCACGCCTAACATAGCCGGGCTGACTGACCCCTCCGTAGTTTGGTTTTGGATTTGTTATATACACAATTTGATTGGTTCAAGAGATGATTTCGGTTGCCGCAAGTAAGCAGCTAATAGAGAGCCACAGCAGGCAGTGGAGAGCTCGTTCCCGGGTTTTTTTCAAGCAGGAATAGCTTAATGTATTTTCGTTTTTTTTTTCTTAAAGCTATTGAGATCGTGATACTGCTGTTTTTTTTTTTTTTTTTT

Network for GWHGAAEX015459

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06418.13	CTP_synth_N	2	272	4.20E-125
PF00117.27	GATase	309	544	1.30E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01937	pyrG, CTPS	Metabolic pathways	map01100
K01937	pyrG, CTPS	Pyrimidine metabolism	map00240

Gene Ontology

GO term	Ontology	Name
GO:0006241	Biological Process	CTP biosynthetic process
GO:0006221	Biological Process	pyrimidine nucleotide biosynthetic process
GO:0003883	Molecular Function	CTP synthase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	31.060
SRP064423	SRR2545915	Juvenile tuber	62.640
SRP108465	SRR5643513	five period of Gastrodia elata	20.840
	SRR5643514	five period of Gastrodia elata	63.330
	SRR5643515	five period of Gastrodia elata	34.560
	SRR5643524	five period of Gastrodia elata	50.930
	SRR5643525	five period of Gastrodia elata	49.030
	SRR5643528	five period of Gastrodia elata	91.250
	SRR5643658	five period of Gastrodia elata	120.970
	SRR5643659	five period of Gastrodia elata	19.350
	SRR5643660	five period of Gastrodia elata	21.210
	SRR5643661	five period of Gastrodia elata	20.810
	SRR5643662	five period of Gastrodia elata	26.640
	SRR5643663	five period of Gastrodia elata	17.860
	SRR5643664	five period of Gastrodia elata	19.010
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	37.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	34.440
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	55.120
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	30.180
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	64.600
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	49.710
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	56.780
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	58.120
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	109.460
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	172.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	57.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	57.880
SRP279888	Gastro	Gastrodia elata tuber	34.23
	Juven	Juvenile tuber	50.98
	Mother_Gastro	Mother tuber of Gastrodia elata	238.08
	Mother_Juven	Mother tuber of Juvenile	79.32