Gene detail

Detail information of GWHGAAEX015461/evm.TU.scaffold_67.49

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|271963231\|ref\|YP_003337427.1\|	1.00E-08	hydrolase [Streptosporangium roseum DSM 43021]
KOG	KOG2931	9.00E-180	Differentiation-related gene 1 protein (NDR1 protein), related proteins
nr	gi\|743799484\|ref\|XP_010925489.1\|	0	PREDICTED: pollen-specific protein SF21-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|O23969\|SF21_HELAN	2.00E-151	Pollen-specific protein SF21
trEMBL	tr\|M0RM20\|M0RM20_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P27960_001}
TAIR	AT5G56750	9.00E-180	N-MYC downregulated-like 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000065	2726601	2738206	+

Transcript Sequence
>GWHTAAEX015461 AAAAAAAGACAAAAAAAAAACAAAGGCGAGTCGACGGAGAAGGGCAAGGGGAGAGCTGCGGAGGATTGAGATCGCCATACGAGAGATTGCCCTTTCTCAGACTAGTTTGACCTCGCCGCAGGAGATGGGTCATTCCGGCAGCTCCATCTCCATTGATGTCGAGAGAATCGCCTTCGGCGGGAAGGACCATCATGTTGAAACCAGTTATGGGCCTATTTCTGTTGCTGTGTATGGAGATCAGGACAAGCCGGCACTCATTACTTATCCAGATGTTGCCTTAAACTACATGACATGCTTCCAAGGGTTGTTCTTTTGCCCTGAAGCTGCTTCATTGCTGCTTCACAATTTCTGCATATATCATATCTGTCCTCCGGGGCATGAGTTGGCAGCATCTCCGATTTCTTCGAATATTCCTGTTCCTTCTGTTGATGATTTGGCTGATCAGGTTGCTGAGATCCTCGACTTCTTTGGATTAGATTCTGCTATGTGTTTCGGGGTCACCGCAGGTGCTTATATTCTCACTCTTTTTGCTACAAGACACAGCGATCGGGTTCTTGGTTTGATACTGGTCTCTCCTCTCTGCAGAGCGCCTTCTTGGAGGGAATGGCTGTATGATAAGATATTGTCAAATTTGTTATATTTCTATGGGCTCTGTGGCTTGGTCAAGGAATTCTTGCTTCAGAGATACTTCAGTAAGGAATTGCTTGGAAATGCACAGATCCCGGAATCCGACATTGTGCGGGCGTGCAGATGTCTATTGGAAAAGAAGCATAATACCAATGTTCTGAGGTTTTTCCAGTCCTTAAGTGGGCGATATGATATTACCGCAAAGCTGAAGAAATTAAGGTGCAAAACGTTAATTTTCGTTGGAGAGAATTCTCCCTTCTACTCTGAATCGCTTCACATGATGTCTAAATTAGATTGCAGATACAGCGCACTTGTTGAGGTTCAGGCTTGCGGGTCGGTGGTGACGGAGGAGCAGCCGCATGCCATGCTGATACCGCTGGAGTTCTTCTTCATGGGGTACGGCTTGTACAGGCCATGCCATTCGAGTGGCAGCCCGCGCAGCCCCCTCTGCATCTCGCCGGATCTCCTGTCGCCGGAGAGCATGGGCCTCAAGCTCAAGCCCATCAGAACCAGGGTTGCTTCTCTTCAGGTCTGATTAATCCTTGTCTCTCCTTTTCTATTCTTTTTCGGTTTGGGGCTGTGTTTATGAGAAAGCTTTTTTGGCTTGCTTGTATAGAAGAAAGAAAGAAATAGTTGGGAGGGGGGGGGGTGTGTGAAAATTATAATCATTCATTTGTATTATCATAAAAATATGTTGATGCTGTATCTATTTTGGTGAAATAATAAGGTATAACTACATTTGATGAAAAAGAGAAATTATGACCACCCAAATCTTTGGAATTTTCG

Network for GWHGAAEX015461

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03096.13	Ndr	22	305	7.00E-105

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	26.880
SRP064423	SRR2545915	Juvenile tuber	33.680
SRP108465	SRR5643513	five period of Gastrodia elata	30.230
	SRR5643514	five period of Gastrodia elata	30.060
	SRR5643515	five period of Gastrodia elata	28.780
	SRR5643524	five period of Gastrodia elata	27.190
	SRR5643525	five period of Gastrodia elata	38.630
	SRR5643528	five period of Gastrodia elata	30.930
	SRR5643658	five period of Gastrodia elata	61.380
	SRR5643659	five period of Gastrodia elata	48.560
	SRR5643660	five period of Gastrodia elata	42.000
	SRR5643661	five period of Gastrodia elata	53.640
	SRR5643662	five period of Gastrodia elata	55.870
	SRR5643663	five period of Gastrodia elata	85.660
	SRR5643664	five period of Gastrodia elata	80.320
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.570
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	30.140
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.890
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	35.810
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	24.150
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	22.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	42.410
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	31.010
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	39.410
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	54.470
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	37.510
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	37.510
SRP279888	Gastro	Gastrodia elata tuber	115.67
	Juven	Juvenile tuber	44.54
	Mother_Gastro	Mother tuber of Gastrodia elata	31.66
	Mother_Juven	Mother tuber of Juvenile	61.12