Detail information of GWHGAAEX015463/evm.TU.scaffold_67.55


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|530779864|ref|YP_008431664.1|6.00E-24hypothetical protein N186_01315 [Thermofilum sp. 1910b]
KOGKOG00846.00E-121GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins
nrgi|357135226|ref|XP_003569212.1|4.12E-128PREDICTED: ras-related protein RIC1 [Brachypodium distachyon]
Swissprottr|P40392|RIC1_ORYSJ3.00E-130Ras-related protein RIC1
trEMBLtr|I1NP13|I1NP13_ORYGL8.00E-129Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA01G0160300.1}
TAIRAT1G021306.00E-121RAS 5

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006529206212953345-
Transcript Sequence

Network for GWHGAAEX015463

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.21Ras331931.30E-66
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07874RAB1A Autophagy - animal map04140

Gene Ontology

GO term OntologyName
GO:0003924Molecular FunctionGTPase activity
GO:0005525Molecular FunctionGTP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms49.600
SRR2545915Juvenile tuber64.860
SRP108465SRR5643513five period of Gastrodia elata86.000
SRR5643514five period of Gastrodia elata106.230
SRR5643515five period of Gastrodia elata91.810
SRR5643524five period of Gastrodia elata102.200
SRR5643525five period of Gastrodia elata127.530
SRR5643528five period of Gastrodia elata122.540
SRR5643658five period of Gastrodia elata135.020
SRR5643659five period of Gastrodia elata78.410
SRR5643660five period of Gastrodia elata75.570
SRR5643661five period of Gastrodia elata85.610
SRR5643662five period of Gastrodia elata88.020
SRR5643663five period of Gastrodia elata86.190
SRR5643664five period of Gastrodia elata85.820
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_163.480
SRR6049655Rhizomagastrodiae_C368-T10_good_165.650
SRR6049656Rhizomagastrodiae_C368-T07_good_178.810
SRR6049657Rhizomagastrodiae_C368-T07_good_163.380
SRR6049658Rhizomagastrodiae_C368-T04_good_171.000
SRR6049659Rhizomagastrodiae_C368-T04_good_167.960
SRR6049660Rhizomagastrodiae_C368-T01_good_167.770
SRR6049661Rhizomagastrodiae_C368-T04_good_164.150
SRR6049662Rhizomagastrodiae_C368-T01_good_179.270
SRR6049663Rhizomagastrodiae_C368-T01_good_172.670
SRR6049664Rhizomagastrodiae_C368-T10_good_198.130
SRR6049665Rhizomagastrodiae_C368-T10_good_198.130
SRP279888GastroGastrodia elata tuber 74.82
JuvenJuvenile tuber87.07
Mother_GastroMother tuber of Gastrodia elata 74.86
Mother_JuvenMother tuber of Juvenile 45.20