Detail information of GWHGAAEX015465/evm.TU.scaffold_67.57
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502232|ref|YP_001957949.1| | 7.00E-11 | hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2] |
| KOG | KOG0167 | 5.00E-123 | FOG: Armadillo/beta-catenin-like repeats |
| nr | gi|695032150|ref|XP_009403611.1| | 2.49E-147 | PREDICTED: U-box domain-containing protein 9-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SRT0|PUB9_ARATH | 1.00E-123 | U-box domain-containing protein 9 |
| trEMBL | tr|M0TWM4|M0TWM4_MUSAM | 9.00E-142 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P01670_001} |
| TAIR | AT3G07360 | 5.00E-123 | plant U-box 9 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000065 | 2965334 | 2969863 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015465
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04564.14 | U-box | 173 | 243 | 2.90E-16 |
| PF00514.22 | Arm | 388 | 425 | 2.40E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016567 | Biological Process | protein ubiquitination |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004842 | Molecular Function | ubiquitin-protein transferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.550 |
| SRR2545915 | Juvenile tuber | 26.780 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 22.500 |
| SRR5643514 | five period of Gastrodia elata | 24.130 | |
| SRR5643515 | five period of Gastrodia elata | 17.610 | |
| SRR5643524 | five period of Gastrodia elata | 19.260 | |
| SRR5643525 | five period of Gastrodia elata | 80.380 | |
| SRR5643528 | five period of Gastrodia elata | 34.940 | |
| SRR5643658 | five period of Gastrodia elata | 45.570 | |
| SRR5643659 | five period of Gastrodia elata | 39.080 | |
| SRR5643660 | five period of Gastrodia elata | 30.070 | |
| SRR5643661 | five period of Gastrodia elata | 36.690 | |
| SRR5643662 | five period of Gastrodia elata | 37.150 | |
| SRR5643663 | five period of Gastrodia elata | 50.110 | |
| SRR5643664 | five period of Gastrodia elata | 34.400 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.910 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 27.060 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.350 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 21.450 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 22.140 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.520 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.700 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 23.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 23.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 43.15 |
| Juven | Juvenile tuber | 26.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.86 | |
| Mother_Juven | Mother tuber of Juvenile | 15.41 |