Gene detail

Detail information of GWHGAAEX015470/evm.TU.scaffold_67.74

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0779	1.00E-85	Protease, Ulp1 family
nr	gi\|743774684\|ref\|XP_010917703.1\|	0	PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q8L7S0\|ULP2B_ARATH	5.00E-129	Probable ubiquitin-like-specific protease 2B
trEMBL	tr\|B9S9I8\|B9S9I8_RICCO	3.00E-146	Sentrin/sumo-specific protease, putative {ECO:0000313\|EMBL:EEF39744.1}
TAIR	AT1G09730	1.00E-85	Cysteine proteinases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000065	3895937	3995775	+

Transcript Sequence
>GWHTAAEX015470 TGACTGCGGTCTCTGTAGCGCGGACGGAGTCATGTAATCCGGTGTGACGAGTCAAATGCATGCGCACCATTTTTCGTTGTAACAGGGCTGTCGCTGTATGACTTGTGGCTGTCTCTGCGGAGTTCGATTTGGGCAGCTCGGCTGATCACTCTGCGATTTCCATATCAATCCGATTCTTCCGAAATCTGCTGATACTTCTCTCTCTCCTAACCTTGCTTGAATTACGGCAGTTTCTGGGTTCTGTTGTCAAATTTCCTGCCCAATCTAGGTTTTTATGTGAATTTTGTGTTGGATCTGTCACCCATGAGGAACTCTTCCAAGGATCTTTCTGTCTTTGATTTCAAATCAGATGAAGTCGGTGATGCGGGCGACAAGCTAACCAAGTACCAGTTTTTGAAAGCTTTTACATCAGGATGTCTCCAACATGTACGGCAACCAGATATGTCCGATGTGCCACTTATTGATTTACATGAAGCTGATAGTCCTGAGAGGTTTACAGCTGATAGAAATGTGGCTTCCACTGAGGAGAATTCTGAGCTGGATGATGTTAAAGCTTGCTCAACAAGCTATTGCAAACATACTAGAACTTGCAATACTGATTTTAGCCCCAGAAGTCTTTCTCAGAAAGGACTTGGTGCTTCTACAATTCTTGTAACCTCAGTTTATGATGATGAAGATTCTGATTTACAGTTTTCTGATGTGGATTTGATGTCAGATGAAGAATGCTCTGCTTCATTGTCCGAAGCTTCAACAACTAGTGGCAATTTCCCTGAGAGTGATGGTCCTCTGGAATGCCCAGTATTGGAATTCTTCCATTCTGATTGTGAAAAGATGGATAATAGGAAAAACACGGTCGTTGTTAGTCCTGATTTTGTTTATTATAGGGGCTTGCTTTTTCTTGAATCTCAATTATCGTTCTATTCAGACTGCATCAAGATTGATTGTTCTGATGCAAGCAGAATTGATGAAAATGTTACTTTAGTGTGTGACATTGCCGATATCATTTCCATTAGCACTCAGTGGAGTAGAAGTGTTGAGGCTGTATTGTTCAAGTTATGGATAAGAACAAATGCTGGACATGATGTGGAGAGATTTATAGCGTCTATTGCTGATGCATTCTGGTCGGAGAAAGAGAAAAAAATCAAATCTTTGGCAGAAAGATACAGAGATATCTGGGGTGCTCTACCCGACAATAATAATTGTGCCTTGGATGGTGACATGGTCAGGACACATGCGTCTTTTTCAAAGCGGTATTTTAGCGAAAACATGGAGCCATTTGATGATGTTATATACCCCAAGGGAGATCCTGATGCTGTTTCTATTAGTAAAAGGGATATTGAGCTATTGGAACCTGATACATTTATTAATGACACAATAATTGATTTCTATATCAAGTACTTGCAGGATAAGGTTCAACCTGATGAGAAGAAAAGGTTTCACTTTTTTAACAGCTTTTTCTTTCGTAAGCTGGCTGACCTTGACAAATATCCAGGAAGTATTTTGGAAGGGAAGGCAGCATTTCAACGAGTTCAGAAATGGACACGTAAACTAAATATATTTGAAAAGGATTACATATTTGTACCAGTTAATTTCAATCTTCACTGGAGCTTGCTTGTTATTTGTCACCCTGGGGAAATAATCAACTTTAGAGATGATGAGATGAAGAACTCTCTCAAAGTTCCCTGCATTTTGCATATGGATTCGATTAAAGGAAGTCATAATGGACTTAAAAATCTCATTCAGAGTTACCTTTTGGAGGAATGGAAGGGAAGGCATCCAGAGTATCCTGATGACATTATACACAGATTTTCAAATCTTAAATTTGTTTCTCTTGAGTTGCCACAACAGGAAAACTCATCTGATTGTGGACTCTTTCTGTTGCACTATGTGGAGTTATTCTTGGAAGAAGCTCCTGATTATATCAACCCGACCAGAATCACTAAACTATCAAATTTTCTTACTGCGGACTGGTTTCCACCTGCTGAAGCTTCTTTTAAACGCTTTCATATCCGTGGGCTATTAGATGATCTTTTAAGGGATTCATCACAAAAACCAACTCCAACTTGCAGCTATGGGGATTTCCCTTGCCCTTGTGATGATGTTGATCCTGCTGTAGAACTTCTTTCTGCAGAGGACAGCACATCAAAAGTACTTGATGGGTCAACTTTAACACCACTAGCAGCTCAGGAAGATAGTTTTGAACATACAGAATCAAAGGAGTCTACAGCTTGCTCTATGGAGGAACATGGGGATGCCAAAACTGATGCAGCAGATCAGCATCTAGATGAGGTGGGGAAAGAAGACCAATCAGAACAGCAAATTGTTGTTGACAGCCCGACTTCTCGAACCTGTTCCACATCATATCCCTCAAACAGCAATCCAGACTCTTACGAAGAGCAAGTAAAGGGACCACCCATCATCTCCTCCCCGAATGGGACGGACGAAACCCAAATGCCTGTGTCCGTCCCCGATGGCTGCACTGTCGTTCCCGATTCTCCCATTGAGAAAAACACGGAAAACCCACATGAAATGGATGATCTGGAGATCCATGCTGATGATGATCATTCACTTGGCTACGAAGAAGGATGTCTCCTTGAAACAACTGAAAAAAGCCTTGGAGAAGCGACGGACAGCAGCCAGGAGGAAGCCTGCCAAGATGGGGTGGTTGAGGTGATTCCTTTGGACAGTGATTTCGTTCAGCACAAAAGGCACAGAACAACGATGTCGGGATCGGCCTTCAAGCGCCGGAAGACTATGCAGCAGGATGTCCAGCGCAGGGTCACCAGAAGCTCTTCCAAAGAGTGCTCTACCTGATTTGTCTGCCTTCTTTATTTTAGCATCTCATCCTATATAGAATGTTTTGAGTCCTTTTTTTGTTAAATGTGTATATATTCTCTTGTTCTTTGCAGTCGCTCTGGATTCTTATAATCTCTTTGGTCAACATCTATATAATACTTTGGTTTCTTATTGTTTTGAATGGACTGCCGTTTTGGGTCATCTCCCAGCAAAAGTCTATTTGTTACGAATTTATTCTCTGATGATATAGAATACAATCATTTATTAATA

Network for GWHGAAEX015470

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02902.18	Peptidase_C48	353	541	3.10E-37

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	ULP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	Biological Process	proteolysis
GO:0008234	Molecular Function	cysteine-type peptidase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	84.920
SRP064423	SRR2545915	Juvenile tuber	60.520
SRP108465	SRR5643513	five period of Gastrodia elata	32.620
	SRR5643514	five period of Gastrodia elata	34.800
	SRR5643515	five period of Gastrodia elata	31.000
	SRR5643524	five period of Gastrodia elata	34.050
	SRR5643525	five period of Gastrodia elata	40.200
	SRR5643528	five period of Gastrodia elata	37.890
	SRR5643658	five period of Gastrodia elata	56.520
	SRR5643659	five period of Gastrodia elata	28.540
	SRR5643660	five period of Gastrodia elata	29.650
	SRR5643661	five period of Gastrodia elata	27.510
	SRR5643662	five period of Gastrodia elata	29.560
	SRR5643663	five period of Gastrodia elata	31.990
	SRR5643664	five period of Gastrodia elata	33.280
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	40.700
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	38.420
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	36.410
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	42.570
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	37.350
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	50.100
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	42.700
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	42.050
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	33.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	35.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	33.370
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	33.370
SRP279888	Gastro	Gastrodia elata tuber	27.58
	Juven	Juvenile tuber	22.67
	Mother_Gastro	Mother tuber of Gastrodia elata	25.08
	Mother_Juven	Mother tuber of Juvenile	22.65