Detail information of GWHGAAEX015471/evm.TU.scaffold_67.76
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146298365|ref|YP_001192956.1| | 2.00E-25 | two component regulator [Flavobacterium johnsoniae UW101] |
| nr | gi|695056717|ref|XP_009416591.1| | 0 | PREDICTED: probable receptor protein kinase TMK1 isoform X1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P43298|TMK1_ARATH | 0 | Probable receptor protein kinase TMK1 (Precursor) |
| trEMBL | tr|A0A068EUD3|A0A068EUD3_COCNU | 0 | Leucine-rich repeat receptor-like protein kinase {ECO:0000313|EMBL:AID55112.1} |
| TAIR | AT1G66150 | 0 | transmembrane kinase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000065 | 4033356 | 4038447 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015471
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 32 | 67 | 8.90E-05 |
| PF08263.11 | LRRNT_2 | 332 | 365 | 0.00079 |
| PF00069.24 | Pkinase | 583 | 856 | 2.50E-44 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-IX |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.200 |
| SRR2545915 | Juvenile tuber | 4.370 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.480 |
| SRR5643514 | five period of Gastrodia elata | 12.460 | |
| SRR5643515 | five period of Gastrodia elata | 15.470 | |
| SRR5643524 | five period of Gastrodia elata | 11.440 | |
| SRR5643525 | five period of Gastrodia elata | 14.490 | |
| SRR5643528 | five period of Gastrodia elata | 11.200 | |
| SRR5643658 | five period of Gastrodia elata | 13.070 | |
| SRR5643659 | five period of Gastrodia elata | 14.650 | |
| SRR5643660 | five period of Gastrodia elata | 14.940 | |
| SRR5643661 | five period of Gastrodia elata | 15.170 | |
| SRR5643662 | five period of Gastrodia elata | 11.880 | |
| SRR5643663 | five period of Gastrodia elata | 11.240 | |
| SRR5643664 | five period of Gastrodia elata | 11.590 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.650 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.610 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.890 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.630 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.690 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.860 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.900 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.790 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.790 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.23 |
| Juven | Juvenile tuber | 12.28 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.98 | |
| Mother_Juven | Mother tuber of Juvenile | 8.20 |