Detail information of GWHGAAEX015473/evm.TU.scaffold_67.78


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|255037562|ref|YP_003088183.1|2.00E-127serine hydroxymethyltransferase [Dyadobacter fermentans DSM 18053]
KOGKOG24670Glycine/serine hydroxymethyltransferase
nrgi|590656253|ref|XP_007034218.1|0Serine hydroxymethyltransferase 4 isoform 1 [Theobroma cacao]
Swissprottr|O23254|GLYC4_ARATH0Serine hydroxymethyltransferase 4
trEMBLtr|A0A061ES58|A0A061ES58_THECC0Serine hydroxymethyltransferase {ECO:0000256|RuleBase:RU000585}
TAIRAT4G139300serine hydroxymethyltransferase 4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006541035594109377-
Transcript Sequence

Network for GWHGAAEX015473

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00464.18SHMT714691.70E-183
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00600glyA, SHMT Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Glyoxylate and dicarboxylate metabolismmap00630
Methane metabolismmap00680
Pyrimidine metabolismmap00240
Cyanoamino acid metabolismmap00460
One carbon pool by folatemap00670

Gene Ontology

GO term OntologyName
GO:0035999Biological Processtetrahydrofolate interconversion
GO:0019264Biological Processglycine biosynthetic process from serine
GO:0030170Molecular Functionpyridoxal phosphate binding
GO:0004372Molecular Functionglycine hydroxymethyltransferase activity
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.940
SRR2545915Juvenile tuber19.350
SRP108465SRR5643513five period of Gastrodia elata39.450
SRR5643514five period of Gastrodia elata41.450
SRR5643515five period of Gastrodia elata43.680
SRR5643524five period of Gastrodia elata42.670
SRR5643525five period of Gastrodia elata36.890
SRR5643528five period of Gastrodia elata35.480
SRR5643658five period of Gastrodia elata27.220
SRR5643659five period of Gastrodia elata47.650
SRR5643660five period of Gastrodia elata44.660
SRR5643661five period of Gastrodia elata49.640
SRR5643662five period of Gastrodia elata61.960
SRR5643663five period of Gastrodia elata64.340
SRR5643664five period of Gastrodia elata56.250
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_136.850
SRR6049655Rhizomagastrodiae_C368-T10_good_136.140
SRR6049656Rhizomagastrodiae_C368-T07_good_138.670
SRR6049657Rhizomagastrodiae_C368-T07_good_132.630
SRR6049658Rhizomagastrodiae_C368-T04_good_129.590
SRR6049659Rhizomagastrodiae_C368-T04_good_127.220
SRR6049660Rhizomagastrodiae_C368-T01_good_129.240
SRR6049661Rhizomagastrodiae_C368-T04_good_132.920
SRR6049662Rhizomagastrodiae_C368-T01_good_142.550
SRR6049663Rhizomagastrodiae_C368-T01_good_139.120
SRR6049664Rhizomagastrodiae_C368-T10_good_141.540
SRR6049665Rhizomagastrodiae_C368-T10_good_141.540
SRP279888GastroGastrodia elata tuber 46.17
JuvenJuvenile tuber42.46
Mother_GastroMother tuber of Gastrodia elata 18.63
Mother_JuvenMother tuber of Juvenile 41.14