Gene detail

Detail information of GWHGAAEX015492/evm.TU.scaffold_67.104

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0962	DNA repair protein RAD50, ABC-type ATPase/SMC superfamily
nr	gi\|743803757\|ref\|XP_010927015.1\|	PREDICTED: DNA repair protein RAD50 [Elaeis guineensis]
Swissprot	tr\|Q9SL02\|RAD50_ARATH	DNA repair protein RAD50
trEMBL	tr\|A0A0A0L416\|A0A0A0L416_CUCSA	Uncharacterized protein {ECO:0000313\|EMBL:KGN56710.1}
TAIR	AT2G31970	DNA repair-recombination protein (RAD50)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000065	4809943	4908121	-

Transcript Sequence
>GWHTAAEX015492 ATTATTATAAACTGAATTGTGGGACTAAAAGTTACATTTTATTATGAGTTGAAAGACTAATAATAACAATTTTTGAGTCAATAATTTAAACGAGCAAAGTATAAGAGTACAAGGACCATTTTGATTATTAACTCAATTATATATTATTGTCTATTTGTAATTGCATTTAACAATGTAACCTTTATGTTGGCCTAAAAATTATTTTCCTAAAAGTGTGTTTGATTTTAAAATTTTATTAATGTCACAAGCATTCATAGTTTATTCCTTTGGTTGTTAAAGCTTAGCAGCTTTTGAATATTTTGTTTAATGTGCAAATATATATTTGACAACTTAAATGGCATCATTTATTATCTATTTTTTTCAGTTTGTCTGATTTTTTTTGCTTCTATAAAATGGCTTATAAAGAGAATTTAATTAGTGCCAAAACCATTTATATTTTAGTGTCCCATAAAAGGTACTTGATGCTTAGGAAAAATTGAAAAAAATGGCAGAATCTGTCAGAAATAAGCTATAAGAGCCCGCACAAATGTTTGGCTCAACTGGCCCTTTTAGGCATACGCATGCCGGTTAATTAGTTTGATGAAGCTTCTGGAAATTTATGAATTGTCTGATAGGTGTCACTCATCATCAGTTTTTATTTTAAACTCCGTGACAACATCTCCCAAGATCAAGAAAAAATTGAAACACTAAAAATTAAAATTAAGGAATTGGAAAGGAGCATTCAAGGTGTTGAGACTAAAATATTGCATGAAGAAATGACATTGAAAGAGTTGCGTAAACTTCAGGATCAGATTTCAACCCATACTACAGCAAGAAGCACATTGTTTAAACTTCAACAGACTCAGTATGCTTCACTTGCTGAGGAAAATGAAGATACGGATGAGGAATTAAAAGAATGGCAAACAAAATTTGAAGAAAGGATCGCACTGCTTCAGTTTAAAATAAGTAAGCGGGAGAGGGAGATGAGTGATGAAGAGACCAAATGTTCTTTGCTTTCACAGGCAATAAATGACTCTATGCGGGAGATTGGAAAGCTTCAAGCTGAAAGTGATGCACACATGTCAGTGAGGCGAGAACACGATTCAACAATACAGAGAAGTTTTGTGAAGTATAACCTTGGATCCCTTCCTGATGCCCCTTTCAGCATTGAGTTATCTAACAGCCTTTCAAATAAAATAAAAACAAGGCTATTTGATCTGGAGAAAGATCTGCAGGAGAGAAAGAAATCCAATGAAATAGAACTAAAGATATTGTGGGAGCGCTATGTAGCAATGAATGCTCGATGTAGTGAAATTGAAGGACAAAAGCAAGCTAAGATTCAATCAAAGGCTAGCATAACAAATCGCATTAAAGAGAAGGAGAATGAGCGTGATTTTGCAGAACAAGAGATGTCAAGCCTTAATCTATCACATATCGATGAAAGGGAAAAAAACCTGCAAATTGAGGTTGAGAGGAGGACATTGGCATTAGGGGAGAAAGATTTTGAAGCTGCAATTAATCAAAAGAGAACAGAAATATTTAGTTTGGAGCAAAAGATTAAAGCTCTTTATCGTGAAAAGGATGTTATGGCTAGTGATTCAGAAGATCGAGTTAAGCTAGATTTGAAAAAAGAAGAATCAGAGAGCTGCAAGAGAAAGCAGAAGAAAATAATGGATGAACATAAAGATAGAGTTCGAAGTGTACTAAAAGGAAGACTGCCCTCAGAAAAGGATTTAAAAAAGGAGATAGTTAACGCTTTTGGATCTCTTAAGAAAGAGTATGATGAGTTGAATTCAAAAACTTTTGAAGCTGAGAAAGAGGTGAAAGTGGTTCAGATGAAAATACAAGATGCAAAGAGTCATCTATCCAAACTTCGAAAGGAAATGGATGCTAAGGGAAGATTTCTAGAGTCCAAACTTCATTCCATAATTCAGCAAACTGATATTATTGACTCCTTTCCTAAAGTCTTACTTGAAGCAATGGAGAAAAGGGACGTTCAGAAAAGTAAATACAACATTGCTGATGGGATGAGGCAAATGTTTGACCCTTTTGAAAGAGTTGCTCGTGCACATCACATTTGTCCATGCTGTGAGCGGCCATTCTCTCCCAAGGAGGAGGATGATTTTGTTAGTAAGCAAAGAGTGAAAAGTGCTAGCTCTGCAGAACATATGAAGGTTTTGGCAGTCGATTCTTCAAATGCTGACTCACATTTCCAGCAATTGGACAAGCTCCGAATGATTTATGAAGAATATGTTAAACTTGGAAAAGAAAACATGCCTTTGGCAGAAAAAAATCTAATGGAGTTAATGGAAGATCTTAATCAGAAGTCTCAAGCTTATGATGATCTCCTTGGTGTTATGGCTCATGTCAAGGCTGATAAAGATGCAGTAGAAATGTTGGTGCAACCTGCTGAATCGCTGGATAGGCTCTTTCTTGAAATTCAGAATTTGAAACCTCAAATAGAGGATTTGGAGTATAAACTAGATGCTCGAGGACAAGGCGTAAAATCTATGGAGGAAATTCAATCACAATTAAACTCCTTACAAAGCAAAAGGGATGCTTTGAGTTCTGAAGTAGAGAGTCTGAGGGAAGAGCAGAGATTCTTAAGTGATGATTTATCTAACATACAGATGAGGTGGCATGCTCTTAGAGAAGAGAAATTGAGGGCATCCAGTATATTGCATAAAGTCAAAAAAGCTGAAGAGGATTTGGTTCTTTTATCTGAAGAAAAAGGTCAATTTGAGATTGATGAGAAGCATTTAGCGGAGTCTCTTATTCCCTTGTTGAAGAATAAAGAGAAGGTACTGCAAGAACACTCAAATTTGAAGCTGAAGCTAGATCAAGAGTATGAGGAACTGGTAGAAAACAAAAGAAATTTTCAACAGGAATTTGAAATGGTTCTGAAACTTGCTGCTAAGATCAAAGACTATTTAGATTCAAGAAAGGATGAAAGACTAAAGGAGTTTCAGGCCAAGCTTGCCTTATCTGAGTCTCAGTTGCAGAAATGTGAGAGCAAGAAGCAAGAAATTTTTGCTGATTTAAGCAAAAGTAAAGAGTTACTCAGAAATCAGGATCAATTAAAAAGAAACATAGATGACAATCTGAATTACAGAAAGACAAAAGCTGAAGTGGATGAACTTACTCGTGAGATTGAGTTACTCGAGGAAAAAGTTTTGGCTAATGGAGGAACTGCTTCCATTGAGGCTGAAGTTAAAAGACATTTACAAGAAAAGGAAAGGCTACTTTCAGAGTTGAATCGATGTCAAGGTACAGTTTCCGTTTACTTGAGTAATGTATCAAAGAACAAGCAGGATCTTAAGCAAGCGCAGTACAATGACATTGATAAGAGATACTTCAGCCAACTCATCCAACTTAAGACCACAGAAATGGCAAATAAGGACCTTGACAAATACTACATTGCACTTGATAAAGCGCTCATGCGATTCCATACCATGAAGATGGAGGAAATCAATAAGATCATTAGAGAACTATGGCAGCAGACTTACCGAGGACAGGATATTGATTACATAAGCATACACTCTGATTCTGATGGTGCTGGAACTCGATCCTACAGTTACCGGGTCCTTATGCAAACTGGTGACGCTGAGTTGGAAATGCGGGGAAGGTGTAGTGCTGGTCAGAAGGTTCTTGCTTCTCTCATCATAAGATTGGCATTAGCCGAGACATTCTGTCTTAACTGCGGAATTCTGGCATTGGATGAACCCACTACTAATTTGGATGGTCCAAACTCCGAAAGTCTTGCTGCTGCCCTCTTGCGAATCATGGAAGATCGCAAGGGGCAAGAGAACTTCCAGCTGATAGTCATCACTCACGACGAACGCTTCGCTCAGTTGATCGGCCAGCGGCAGCATGCTGAGAAATACTATCGTGTTATCAAGGACGAGCATCAGCACAGCATCATTGAAGCCCAGGAGATATTTGATTGATCCTTTATTCAAATTATTCATACAAATTTTAGCATACTACAACCTTTGAGCTTTGGGAAAGCCGCAAAGATCAGCACTTTTAAAAACGTCGACCGATCGAGAATATATCAAAATTTGTGCTTCAAGCTATAATTGATGCTGAATCAAGCCTAATGTCATAATGCACTTCAGCTTTTTTACAGCCTAACCTGTGCTGAGATTGTAGTTATTTTTTGCCTTTGTTAACTTCTTTTTTTAAAGGTAAACGTCCATTTCCAGTTTATATATATATATAGATATATGTATATGCTGAAACCAGTATCATTATTCATTCATGCAGAGTACAAATCTACTCTTTGAAGTAAATTATATATAATAGAAAGATTTAACTGTTGGACTGACATTTTTTGGGTTTCCATTCTATTTTTATTGATACATATAATGGATCACATGTTATGCACAGTTGCAATAAAATTTTGATACAACTGTTGGACTAACTGCA

Network for GWHGAAEX015492

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX015492
MTLKELRKLQDQISTHTTARSTLFKLQQTQYASLAEENEDTDEELKEWQTKFEERIALLQFKISKREREMSDEETKCSLLSQAINDSMREIGKLQAESDAHMSVRREHDSTIQRSFVKYNLGSLPDAPFSIELSNSLSNKIKTRLFDLEKDLQERKKSNEIELKILWERYVAMNARCSEIEGQKQAKIQSKASITNRIKEKENERDFAEQEMSSLNLSHIDEREKNLQIEVERRTLALGEKDFEAAINQKRTEIFSLEQKIKALYREKDVMASDSEDRVKLDLKKEESESCKRKQKKIMDEHKDRVRSVLKGRLPSEKDLKKEIVNAFGSLKKEYDELNSKTFEAEKEVKVVQMKIQDAKSHLSKLRKEMDAKGRFLESKLHSIIQQTDIIDSFPKVLLEAMEKRDVQKSKYNIADGMRQMFDPFERVARAHHICPCCERPFSPKEEDDFVSKQRVKSASSAEHMKVLAVDSSNADSHFQQLDKLRMIYEEYVKLGKENMPLAEKNLMELMEDLNQKSQAYDDLLGVMAHVKADKDAVEMLVQPAESLDRLFLEIQNLKPQIEDLEYKLDARGQGVKSMEEIQSQLNSLQSKRDALSSEVESLREEQRFLSDDLSNIQMRWHALREEKLRASSILHKVKKAEEDLVLLSEEKGQFEIDEKHLAESLIPLLKNKEKVLQEHSNLKLKLDQEYEELVENKRNFQQEFEMVLKLAAKIKDYLDSRKDERLKEFQAKLALSESQLQKCESKKQEIFADLSKSKELLRNQDQLKRNIDDNLNYRKTKAEVDELTREIELLEEKVLANGGTASIEAEVKRHLQEKERLLSELNRCQGTVSVYLSNVSKNKQDLKQAQYNDIDKRYFSQLIQLKTTEMANKDLDKYYIALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSDGAGTRSYSYRVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNSESLAAALLRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVIKDEHQHSIIEAQEIFD

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10866	RAD50	Homologous recombination	map03440
		Non-homologous end-joining	map03450
		Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.760
SRP064423	SRR2545915	Juvenile tuber	21.190
SRP108465	SRR5643513	five period of Gastrodia elata	15.810
	SRR5643514	five period of Gastrodia elata	15.270
	SRR5643515	five period of Gastrodia elata	16.090
	SRR5643524	five period of Gastrodia elata	14.910
	SRR5643525	five period of Gastrodia elata	15.460
	SRR5643528	five period of Gastrodia elata	12.290
	SRR5643658	five period of Gastrodia elata	10.030
	SRR5643659	five period of Gastrodia elata	15.060
	SRR5643660	five period of Gastrodia elata	17.230
	SRR5643661	five period of Gastrodia elata	13.170
	SRR5643662	five period of Gastrodia elata	14.410
	SRR5643663	five period of Gastrodia elata	20.310
	SRR5643664	five period of Gastrodia elata	19.310
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	17.140
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.620
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.230
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	19.800
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.940
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	23.070
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.370
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.410
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.790
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.560
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.050
SRP279888	Gastro	Gastrodia elata tuber	28.10
	Juven	Juvenile tuber	32.14
	Mother_Gastro	Mother tuber of Gastrodia elata	36.04
	Mother_Juven	Mother tuber of Juvenile	32.61