Detail information of GWHGAAEX015494/evm.TU.scaffold_68.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|292490295|ref|YP_003525734.1| | 7.00E-66 | DNA-3-methyladenine glycosylase [Nitrosococcus halophilus Nc 4] |
| KOG | KOG4486 | 3.00E-116 | 3-methyladenine DNA glycosylase |
| nr | gi|573923016|ref|XP_006649089.1| | 4.22E-124 | PREDICTED: LOW QUALITY PROTEIN: DNA-3-methyladenine glycosylase-like [Oryza brachyantha] |
| Swissprot | tr|Q39147|3MG_ARATH | 8.00E-117 | DNA-3-methyladenine glycosylase |
| trEMBL | tr|J3LHK3|J3LHK3_ORYBR | 2.00E-124 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB02G41200.1} |
| TAIR | AT3G12040 | 3.00E-116 | DNA-3-methyladenine glycosylase (MAG) |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000064 | 70498 | 100909 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015494
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02245.15 | Pur_DNA_glyco | 61 | 238 | 3.10E-53 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03652 | MPG | Base excision repair | map03410 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006284 | Biological Process | base-excision repair |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0003905 | Molecular Function | alkylbase DNA N-glycosylase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 45.890 |
| SRR2545915 | Juvenile tuber | 25.190 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 26.850 |
| SRR5643514 | five period of Gastrodia elata | 29.430 | |
| SRR5643515 | five period of Gastrodia elata | 27.710 | |
| SRR5643524 | five period of Gastrodia elata | 30.690 | |
| SRR5643525 | five period of Gastrodia elata | 55.560 | |
| SRR5643528 | five period of Gastrodia elata | 56.610 | |
| SRR5643658 | five period of Gastrodia elata | 44.000 | |
| SRR5643659 | five period of Gastrodia elata | 30.380 | |
| SRR5643660 | five period of Gastrodia elata | 30.510 | |
| SRR5643661 | five period of Gastrodia elata | 31.640 | |
| SRR5643662 | five period of Gastrodia elata | 34.310 | |
| SRR5643663 | five period of Gastrodia elata | 28.220 | |
| SRR5643664 | five period of Gastrodia elata | 40.300 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 35.820 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 39.260 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 33.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 39.200 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 41.090 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 43.180 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 33.300 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 32.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 41.300 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 37.440 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 54.130 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 54.130 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 44.82 |
| Juven | Juvenile tuber | 31.09 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 45.30 | |
| Mother_Juven | Mother tuber of Juvenile | 35.95 |