Gene detail

Detail information of GWHGAAEX015496/evm.TU.scaffold_68.6

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2000	Gamma-tubulin complex, DGRIP91/SPC98 component
nr	gi\|743773810\|ref\|XP_010917258.1\|	PREDICTED: gamma-tubulin complex component 3 [Elaeis guineensis]
Swissprot	tr\|Q9FG37\|GACP3_ARATH	Gamma-tubulin complex component 3
trEMBL	tr\|I1IQK3\|I1IQK3_BRADI	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI4G31640.1}
TAIR	AT5G06680	spindle pole body component 98

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000064	141394	144094	-

Transcript Sequence
>GWHTAAEX015496 ATTTACACAGGTTACTCCAAAATGCCGACATGCCTTTGATACGGGGCTTCTCTCCCAGTCCGCCGCCTGAGCGCTGCGTCTCCGCGTCTTGGTAATCATGGACGATTCCACCATTGACCTCGTCAAGGAACTTGTTCTCCGGCTCCTTTCATCGGGAGGCCGTTCCACTCCAACTGCCGGAGACAGCTCCGCTACCGCAGCAGTCCGTTACGCTCTCCGCGTCCTTTCAAGTCGTAATTTACCCTCCGTCCTACCCGATGAGCTCTCGCTTGTTGAATTCATCAAGAGAAGGCTATCCCTCTCGGGTCGCACTCCCTCTGCCCTTGCCTTTGCCGACCTCTACTCCAAGTTCGCTGCCTACGCTCCACTTCTCAATCGTTGGGCCCTTTTATACCTCCTTAACTCCCTTTCTCTTCATCGCAGTCGTCACCCTTCTTCTTCTTCTTCTTCTTCTTCATATGGTAATCTCCCCTTTATACCTCTGCAGCCTTCTTATGCTCCCCAATCTGCTGCTTCCTTCACCGCAGGTGCTCCTGCCGTCACTGCTGGCGTGCTTCTCGTCGCCAAGGATCCCGATAATATCAGGGAGATCGCGCTTCGTGAGTACGCAGATTTGGTTATGGAAGACAGCGAGGTCACGGAGTCTGCATTGGTCAGAGACGTCCTCTATGCTTGCCAAGGAATTGATGGCCGGTACGTCCGCTTCGATAGGTTATCGGATGGATACGATCTACCGGAATCCCTTAAGGTTCCGAGACTCACCAGATCTATGGTTCGTCGGCTTTGTGAACTCGGGTGGCTCTTTAAGAAGGTGAGGGGTTACATTTCGGATAGCATTAGTGATCAAAAGTTTGGGATAGGCACGGTTGGGCAAGCCTTTTGCGCCGCTCTTCAAGAAGAACTCTCTGATTACTATAAGCTTCTGGCAGTTCTAGAATCGCAGTCTGCTAATCCAATCCCCTCAGCTGGATCTGATTCTGGAAGTGGAAGCGGGAATTACCTCTCTTTGCGGCGGCTTGCTGTTTGGCTTGCCGAGCCAATGGTGAGGATGCGTCTAATGGCTGTGCTGGTGGACGGCTGCCAGGAACTAAAGGGTGGAGCCATGGCTGGAGCTATTCACGGTTATGCCCAGCACGGTGATCCTCTAGTTCAGGAATTCATGGGTCGGCTGCTAAGGAGAGTGTGTTCTCCTCTTTTTGAAATGGTGAGGTCTTGGGTATTGGAGGGAGAATTAGAAGATGTGTTTTCCGAATTTTTCATATTGAGTCAACATGCAAAGGCTGAGTCTCTTTGGAGGGAAGGCTATGAGATCCAATCATCTATGCTACCTTCTTTCATATCACCGTTGCTGGCTCAAAGGATTTTGAGGACAGGAAAATCAATCAATTTCTTACGTGTTTGCTGTGAAGACAGTGGATGGGTTGAAGCTGCTGCAGAGGCTGCTGCTCAAGTTGGAGCTACCACCAGAAGGGGTGGACTTGGCTATGGAGAGATTGACGCCCTCGAGGTATTGGCTGTTGAAGCAGCTAAGCGAATTGATCGGCATTTGATGGATGTGATCTTTAATAGGTACAGGTTTAAGAATCATTGCCTTGCAATCAAAAGGTATCTTCTACTTGGGCAGGGAGACTTTGTACAGTACTTGATGGATATCATAGGTCCTGAACTGTCAGAGCCAGCAAATTCTATCAGCTCCTTCCAACTTGCAGGGTTGCTGGAGACTGCGATCCGTGCATCCAATGCGCAGTATGATGATCGGGACATTCTTGATCGGCTCAAAGTTAGGATGATGGATCGTGAAGATGGGGACAGAGGATGGGATGTTTTCTCATTGGAATATGAAGCTAGGGTGCCATTGGACACTGTATTTACAGGCTTAAACATGAAGAGTTATCTTAAGATCTTTAACTTCCTTTGGAAGCTTAAGCGTGTTGAGCATGCATTGACTGGTTTGTGGAAAACAATGAAACCTAATTACATAAATTCTTGCATTTTTTCTGATGAAAGTTTTGGGGTTAAGTTGCAATTTGTATCAGTTTTCCGAAGATGCCAAGTTCTCTGGAATGAGATGAACCACTTTGTGACAAATTTCCAGTGTTATATTATGTTTGAAGTTCTTGAAGTATCCTGGGTTCATTTCTATGAAGGAATGGATTCTTCTAAAGATCTGGATGATCTCCTCACTGCACATGACAAGTACCTCAATTCGATTATGGAGAAATCTCTTCTTGGAGAAAGATCGCAGGGCATAATTAAAACTCTTTATGTGCTGTTTGACCATATACTGCGCTTTCGTAGTCTTGCAGACAGGTGGTTTGAGCATATGTATGACTTGCAGCATAGGTGGGACATGTCTAGATCAAAATCAAAAGGTGAATTAGGCAAGGTGGATTTTTTGATAGATGGTGGGAGAAAAACAATAATTCAGCTTGGTAGAGATTTTTTTGGCAGGATGAGCAAAGACTTGAGCACTGTTGCGAAAGAGTATTCGGCTGCACTTGATGCTTTTATATCTCAGCTTCCAATGCAGCAACATATAGATTTGAAGTTCCTGATGTTTCGCTTGGACTTCACTGAGTACTATAGTCGTGTTTCCTCTAACAAGTGA

Network for GWHGAAEX015496

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04130.12	Spc97_Spc98	188	709	1.70E-112

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0043015	Molecular Function	gamma-tubulin binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.490
SRP064423	SRR2545915	Juvenile tuber	12.300
SRP108465	SRR5643513	five period of Gastrodia elata	9.600
	SRR5643514	five period of Gastrodia elata	9.280
	SRR5643515	five period of Gastrodia elata	11.960
	SRR5643524	five period of Gastrodia elata	9.060
	SRR5643525	five period of Gastrodia elata	8.870
	SRR5643528	five period of Gastrodia elata	9.170
	SRR5643658	five period of Gastrodia elata	7.700
	SRR5643659	five period of Gastrodia elata	14.410
	SRR5643660	five period of Gastrodia elata	13.100
	SRR5643661	five period of Gastrodia elata	14.520
	SRR5643662	five period of Gastrodia elata	14.180
	SRR5643663	five period of Gastrodia elata	12.210
	SRR5643664	five period of Gastrodia elata	11.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.750
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.900
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.340
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.610
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.820
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.590
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.130
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.060
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.180
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.480
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.490
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.490
SRP279888	Gastro	Gastrodia elata tuber	10.04
	Juven	Juvenile tuber	16.28
	Mother_Gastro	Mother tuber of Gastrodia elata	10.24
	Mother_Juven	Mother tuber of Juvenile	16.14