Detail information of GWHGAAEX015502/evm.TU.scaffold_68.15
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|672136431|ref|XP_008791914.1| | 0 | PREDICTED: putative lipoxygenase 5 [Phoenix dactylifera] |
| Swissprot | tr|Q7XV13|LOX5_ORYSJ | 0 | Putative lipoxygenase 5 |
| trEMBL | tr|I1PLN4|I1PLN4_ORYGL | 0 | Lipoxygenase {ECO:0000256|RuleBase:RU003975} |
| TAIR | AT1G17420 | 0 | lipoxygenase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000064 | 623065 | 627287 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015502
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01477.22 | PLAT | 155 | 217 | 1.70E-07 |
| PF00305.18 | Lipoxygenase | 230 | 893 | 1.40E-284 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00454 | LOX2S | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Linoleic acid metabolism | map00591 | ||
| alpha-Linolenic acid metabolism | map00592 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0016702 | Molecular Function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
| GO:0046872 | Molecular Function | metal ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 29.110 |
| SRR2545915 | Juvenile tuber | 34.090 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 46.910 |
| SRR5643514 | five period of Gastrodia elata | 51.780 | |
| SRR5643515 | five period of Gastrodia elata | 138.260 | |
| SRR5643524 | five period of Gastrodia elata | 66.900 | |
| SRR5643525 | five period of Gastrodia elata | 151.490 | |
| SRR5643528 | five period of Gastrodia elata | 188.230 | |
| SRR5643658 | five period of Gastrodia elata | 104.120 | |
| SRR5643659 | five period of Gastrodia elata | 142.480 | |
| SRR5643660 | five period of Gastrodia elata | 64.330 | |
| SRR5643661 | five period of Gastrodia elata | 115.870 | |
| SRR5643662 | five period of Gastrodia elata | 166.880 | |
| SRR5643663 | five period of Gastrodia elata | 105.130 | |
| SRR5643664 | five period of Gastrodia elata | 290.040 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 106.250 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 67.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 74.810 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 80.510 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 83.020 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 94.010 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 150.310 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 82.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 101.410 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 166.370 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 87.050 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 87.050 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 48.77 |
| Juven | Juvenile tuber | 22.78 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 383.68 | |
| Mother_Juven | Mother tuber of Juvenile | 286.48 |