Detail information of GWHGAAEX015506/evm.TU.scaffold_68.20
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 7.00E-52 | FOG: PPR repeat |
| nr | gi|672136461|ref|XP_008791930.1| | 5.23E-65 | PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like, partial [Phoenix dactylifera] |
| Swissprot | tr|Q3EDF8|PPR28_ARATH | 2.00E-52 | Pentatricopeptide repeat-containing protein At1g09900 |
| trEMBL | tr|M0T1E0|M0T1E0_MUSAM | 7.00E-62 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P24650_001} |
| trEMBL | tr|M0T1E0|M0T1E0_MUSAM | 1.00E-20 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P24650_001} |
| trEMBL | tr|M0T1E0|M0T1E0_MUSAM | 4.00E-07 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P24650_001} |
| TAIR | AT1G09900 | 7.00E-52 | Pentatricopeptide repeat (PPR-like) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000064 | 865961 | 867794 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015506
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 84 | 112 | 0.00064 |
| PF13041.5 | PPR_2 | 120 | 165 | 2.60E-11 |
| PF13041.5 | PPR_2 | 188 | 236 | 2.50E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.390 |
| SRR2545915 | Juvenile tuber | 0.330 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.520 |
| SRR5643514 | five period of Gastrodia elata | 0.650 | |
| SRR5643515 | five period of Gastrodia elata | 0.810 | |
| SRR5643524 | five period of Gastrodia elata | 0.940 | |
| SRR5643525 | five period of Gastrodia elata | 0.420 | |
| SRR5643528 | five period of Gastrodia elata | 0.180 | |
| SRR5643658 | five period of Gastrodia elata | 0.230 | |
| SRR5643659 | five period of Gastrodia elata | 1.810 | |
| SRR5643660 | five period of Gastrodia elata | 2.280 | |
| SRR5643661 | five period of Gastrodia elata | 2.600 | |
| SRR5643662 | five period of Gastrodia elata | 2.120 | |
| SRR5643663 | five period of Gastrodia elata | 1.840 | |
| SRR5643664 | five period of Gastrodia elata | 1.580 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.810 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.390 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.600 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.500 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.660 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.190 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.520 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.520 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.59 |
| Juven | Juvenile tuber | 0.56 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.35 | |
| Mother_Juven | Mother tuber of Juvenile | 0.21 |