Gene detail

Detail information of GWHGAAEX015507/evm.TU.scaffold_68.21

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|530780467\|ref\|YP_008432274.1\|	4.00E-108	elongation factor 1-alpha [Thermofilum sp. 1910b]
KOG	KOG0459	0	Polypeptide release factor 3
nr	gi\|743823106\|ref\|XP_010932446.1\|	0	PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like [Elaeis guineensis]
Swissprot	tr\|P50256\|EF1AC_PORPU	8.00E-101	Elongation factor 1-alpha C
trEMBL	tr\|I1IWN6\|I1IWN6_BRADI	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI5G05200.1}
TAIR	AT1G18070	0	Translation elongation factor EF1A/initiation factor IF2gamma family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000064	924889	968195	-

Transcript Sequence
>GWHTAAEX015507 CAAAAGGTTGCTTGCTTGCTCGTGCACAACAATTAATTTTATAGTTCACAATGTGCAACTTCAGACTTTATAGTTCAAAAATTTACATGATAGAAGAAATGCTGGTAAACTAAAATTTCGAGTAAATTTATTACTGTGTCTGTATGGAAAAACAAAATTCCGAACCTCATAGAGTTGTTTGTGACAACGGTAGCCCTAAAGATAGTTCGTTTTACAAGAATAGACCCTTGTCTTCCTGCAATAAAATCCTTTACCTTTACGCCAACAGTGCTATCGTCCCATCGAAGTTGCCAGGATCATAAAGGGACGGCCGTGGCAGACGTGCTTCAGGCTAGTGAGTTAACGGTAGAACCACAGAGACTTGCCCGGCTGCGCGCCAGAGTTCTGTGGTCAATAGCTTGTGATGGAGGTGGACGGAAGAGCCGAGGCAGCCGCCCATTCACCGACTGTCTTGGACGGAGAGGACGTTCAGGATTGGAGTAAGGGCGAAGACGACGCAATAGAGGAAGTTTCGTCGTCCGCCGATCCGATCACCGCCAAAGCTGAGGCGGAGAATTCACCGCCACCTGCTGCTGCTCAAGACATCCATGAAGAGGTAGAATCACACCTCCACGGGTTGCAGTTGGACAAAAAAGAGGAGAAGCTTATTCGACATGATGAAATACAAGAACTTACGGAAAAAGAAGAAGAGAAAAAGCGACATTTGAATGTTGTTTTCATTGGGCATGTTGATGCTGGTAAGTCGACAACTGGAGGGCAAATACTTCTCCTTAGTGGTCAGGTTGATGATCGGACTATTCAAAAGTACGAGAAAGAAGCAAAGGAAAAAAACCGTGAGAGCTGGTATATGGCTTATATCATGGACACCAATGAGGAAGAACGCATAAAGGGAAAGACTGTAGAAGTTGGAAGAGCACATTTTGAAACAGAAAATACAAGATTTACAATTTTAGATGCTCCGGGACATAAAAGTTACGTGCCAAATATGATCAGTGGTGCATCTCAAGCTGATGTTGGAGTGCTAGTCATATCTGCACGCAAAGGTGAATTTGAAACTGGATATGAGAAAGGAGGGCAGACCCGTGAGCATGTTCAACTTGCAAAAACACTGGGTGTTTCTAAGTTGATTGTGGTTGCCAATAAAATGGATGATCCCACAGTGAATTGGTCCAAAGAAAGATATGATGAAATAGAGTCAAAGATGGTTCCTTTCCTGAAGGCATCGGGTTATAATGCCAAGAAAGATGTTCACTTTCTTCCAATATCCGGCTTGATTGGATTCAATATGGCAAGCAGAGTGGATAAAAAAATTTGTAGTTGGTGGGATGGTTCATGTCTTTTTGAAGTCTTGGATGCTATTGAAATTCCTCTGCGAGATCCAAAGGGACCTCTTAGGATGCCTATTATTGATAAATATAAGGACATGGGAACTGTGCTGATGGGAAAGATTGAGTCTGGAACTATCCATGAAAATGATAGCTTGTTGGTCATGCCCAATAAAGCACATGTCAAAGTGCTTGCCGTTTACTGTGATGAGAAAAAGACAAGGCATGCAGGACCTGGTGAAAATGTCAGGGTGAAAGTGTCTGGAGTAGAAGAAGAAGATATATTGTCTGGTTTTGTACTTTCTAGTGTAGTTAATCCGATCAATCCTGCTTTTGAATTTGATGCTCAGCTGCAAATTCTCGAACTTCTTGATAATGCCATATTTACTGCTGGCTACAAAGCGGTTCTGCATATCCATTCAGTCGTCGAGGAATCAGAGATTGTTGAGCTCATTGAAGAAATTGATGTAAAGAGGAAGAAAGAAGGGGATCTGAAGAAAAGGAAACCAAAGAGGAAACCTCTTTTTGTCAAGAACGGAGCTGTTGTTGTTTGCAGAATACAGGTCAACAATTTGATATGCATCGAAAATTTCTTGGATTACCCGCAACTGGGTCGGTTTACTCTTCGTACTGAAGGTAAAACTATTGCTGTAGGGAAAGTAGTGGCCCTTCCACCTTCAGGGAATTCGACTTTCACAGCTTAAAAGTACTTGGAAGGTTGTTGAAGAACAGGATTTGAGTCTTGACAGAAGTTTATGGTGTAATGTTTGTTTCATATTGTATCATTTGTGCTTCCTTGGCTAGCATGTAATAGAAGTGAGTGATGATGGGCTCTTATATAGTTTAGAGATTTCACATATATTCATTGTGCGGTAGGCTGAGGATTGAGAGTGTGGCCTTGCCAACAACATTTTTGCATTCGTAAGACTATGCTATTTTTTTTACATAATGTAATTTTATGAATGATTTTTGAGGCGAGTTTAGGGATTTTACATTTCAAGCAGTGCATTTGTGATTTCATTGTTACAATATTTCTTGACTTTGCCATCAGCATTTTAGTTTTTTGTTGTTGATTTTTTTAGCAAAATGGCTTCTTGTCCTGAACTTATTTGTTGGCCACACTTGAGGTGGAAAAGCACTTTTTTGCCTACTGTGTTAGAGTAGATGACATTTAACAAGATTAAGATTGAATCATTTAATGCAAATAGTTTGGAATGGTG

Network for GWHGAAEX015507

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00009.26	GTP_EFTU	98	311	2.90E-43
PF03144.24	GTP_EFTU_D2	342	408	1.50E-09
PF03143.16	GTP_EFTU_D3	414	530	1.50E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03267	ERF3, GSPT	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003924	Molecular Function	GTPase activity
GO:0005525	Molecular Function	GTP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	93.760
SRP064423	SRR2545915	Juvenile tuber	78.180
SRP108465	SRR5643513	five period of Gastrodia elata	99.240
	SRR5643514	five period of Gastrodia elata	87.780
	SRR5643515	five period of Gastrodia elata	86.170
	SRR5643524	five period of Gastrodia elata	86.330
	SRR5643525	five period of Gastrodia elata	91.510
	SRR5643528	five period of Gastrodia elata	104.620
	SRR5643658	five period of Gastrodia elata	95.550
	SRR5643659	five period of Gastrodia elata	100.570
	SRR5643660	five period of Gastrodia elata	96.140
	SRR5643661	five period of Gastrodia elata	99.580
	SRR5643662	five period of Gastrodia elata	95.470
	SRR5643663	five period of Gastrodia elata	96.480
	SRR5643664	five period of Gastrodia elata	97.650
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	98.020
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	74.120
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	98.680
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	93.100
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	107.330
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	102.370
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	92.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	93.670
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	112.480
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	99.160
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	105.520
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	105.520
SRP279888	Gastro	Gastrodia elata tuber	97.09
	Juven	Juvenile tuber	132.04
	Mother_Gastro	Mother tuber of Gastrodia elata	82.07
	Mother_Juven	Mother tuber of Juvenile	110.92