Detail information of GWHGAAEX015520/evm.TU.scaffold_68.42
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 2.00E-57 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|695041599|ref|XP_009408412.1| | 0 | PREDICTED: LRR receptor-like serine/threonine-protein kinase ERECTA [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q42371|ERECT_ARATH | 0 | LRR receptor-like serine/threonine-protein kinase ERECTA {ECO:0000303|PubMed:8624444} (Precursor) |
| trEMBL | tr|D7STX8|D7STX8_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI20727.3} |
| TAIR | AT2G26330 | 0 | Leucine-rich receptor-like protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000064 | 1746240 | 1760601 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015520
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 31 | 70 | 1.60E-10 |
| PF13855.5 | LRR_8 | 122 | 182 | 6.20E-07 |
| PF13855.5 | LRR_8 | 394 | 445 | 1.60E-07 |
| PF00069.24 | Pkinase | 657 | 917 | 1.40E-42 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XIIIb |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K20718 | ER | MAPK signaling pathway - plant | map04016 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.900 |
| SRR2545915 | Juvenile tuber | 11.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.350 |
| SRR5643514 | five period of Gastrodia elata | 8.700 | |
| SRR5643515 | five period of Gastrodia elata | 4.720 | |
| SRR5643524 | five period of Gastrodia elata | 7.700 | |
| SRR5643525 | five period of Gastrodia elata | 0.280 | |
| SRR5643528 | five period of Gastrodia elata | 0.370 | |
| SRR5643658 | five period of Gastrodia elata | 0.630 | |
| SRR5643659 | five period of Gastrodia elata | 3.670 | |
| SRR5643660 | five period of Gastrodia elata | 4.730 | |
| SRR5643661 | five period of Gastrodia elata | 2.630 | |
| SRR5643662 | five period of Gastrodia elata | 0.520 | |
| SRR5643663 | five period of Gastrodia elata | 0.650 | |
| SRR5643664 | five period of Gastrodia elata | 0.770 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.980 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.590 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.470 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.090 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.460 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.970 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.160 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.040 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 24.900 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.350 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.230 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.230 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.41 |
| Juven | Juvenile tuber | 3.94 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.29 | |
| Mother_Juven | Mother tuber of Juvenile | 2.66 |