Detail information of GWHGAAEX015521/evm.TU.scaffold_68.43
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0160 | 0 | Myosin class V heavy chain |
| nr | gi|743773691|ref|XP_010917196.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: myosin-15-like [Elaeis guineensis] |
| Swissprot | tr|Q0WPU1|MYO15_ARATH | 0 | Myosin-15 |
| trEMBL | tr|D7STY0|D7STY0_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI20729.3} |
| TAIR | AT4G33200 | 0 | myosin, putative |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000064 | 1807921 | 1918213 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015521
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00063.20 | Myosin_head | 60 | 716 | 9.90E-248 |
| PF00612.26 | IQ | 756 | 774 | 0.051 |
| PF00612.26 | IQ | 851 | 871 | 0.07 |
| PF01843.18 | DIL | 1318 | 1404 | 2.20E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0003774 | Molecular Function | motor activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0051015 | Molecular Function | actin filament binding |
| GO:0016459 | Cellular Component | myosin complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 21.260 |
| SRR2545915 | Juvenile tuber | 24.830 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.040 |
| SRR5643514 | five period of Gastrodia elata | 14.260 | |
| SRR5643515 | five period of Gastrodia elata | 16.170 | |
| SRR5643524 | five period of Gastrodia elata | 14.790 | |
| SRR5643525 | five period of Gastrodia elata | 16.580 | |
| SRR5643528 | five period of Gastrodia elata | 10.610 | |
| SRR5643658 | five period of Gastrodia elata | 14.520 | |
| SRR5643659 | five period of Gastrodia elata | 31.600 | |
| SRR5643660 | five period of Gastrodia elata | 38.010 | |
| SRR5643661 | five period of Gastrodia elata | 28.660 | |
| SRR5643662 | five period of Gastrodia elata | 23.850 | |
| SRR5643663 | five period of Gastrodia elata | 27.980 | |
| SRR5643664 | five period of Gastrodia elata | 28.540 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 22.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.840 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.100 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 25.800 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 22.020 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 22.440 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.790 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.800 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.740 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.720 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.720 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 41.82 |
| Juven | Juvenile tuber | 41.05 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 22.18 | |
| Mother_Juven | Mother tuber of Juvenile | 38.12 |