Gene detail

Detail information of GWHGAAEX015539/evm.TU.scaffold_68.72

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|18314051\|ref\|NP_560718.1\|	4.00E-13	hypothetical protein PAE3418 [Pyrobaculum aerophilum str. IM2]
KOG	KOG1361	0	Predicted hydrolase involved in interstrand cross-link repair
nr	gi\|672138273\|ref\|XP_008792888.1\|	0	PREDICTED: uncharacterized protein LOC103709368 [Phoenix dactylifera]
Swissprot	tr\|Q38961\|SNM1_ARATH	3.00E-78	DNA cross-link repair protein SNM1
trEMBL	tr\|M0T3W3\|M0T3W3_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P03650_001}
TAIR	AT2G45700_2	0	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000064	2619501	2696570	+

Transcript Sequence
>GWHTAAEX015539 TATATATTTTAATATATATTAATGTGTAAATATAGTAATATTCTTTAAAATTTTAACAGAATATGTAAATATGCAAATAAATACCTTTAAAATTACAATATTCCAGTTACTAAATCAGGAATAAAATCGAAAGTGGATATACTCTTACGCGATGCTAAGGATTTGAATCCTGCGAAAAACCCCAGCGCATTGGACGACTCTTCAAAGTCCTAGGCCCTCGCAATGTCAGGAGGGGACGCCGGCGGTGATGACGATGATTTCCAGATCCCAGGCCAAGTGGCCCTGAGTCAGAATCTCATCCTCTCCTCCCTCAAAAGCAGCATATGTCAGCCCCTGAAACCTTCTAATGGTAGCCGTTCCATGAAAAGACCGAGGCCATTTTCTGCAATTGGCAAGGAGAATGCCATTATGCTTAAGAGCCAAACTCCTGATTCCAGGGATTCAAAAGGCGGTGCGAAGAGTGCGAACTCCAAAAGGAAGAAGCCTTACCAAAATATTTTTCCAGTTGGTTTAGGGAAGTCTGACATCGCCTTAGGATGCGCTGAGGAGGTTGTGATTGAGGATCAGAATTCTATCAATACATTAAAGATTGTGGATAGTTGGCCATGCCGAGAAGAAAGTTTTGAGAATAGTAGTCGGCGCTTTAAGTCCGTTGAGTCTTGCCTTTTGAAATATGGAGTGAGCGCTTCTTTTAACTTAGACGAAAATTTTTCTTCTGTCCGTACATATAATGATGAAGTTGGTACAAAATTAAGTTCATCCTGTGATTCGGAAAAGTCGGTGACTATGTGGGAGATGGAATCTGCCCTTGAATGCAAGGGTTCTAATGAGACTGTAGTTAAAGAATCATCTCTTGCATTAGATGAGTTGAGACTCGCAGGGGATTCGATAAGCAGAGATGTTGAAGTTGAATCTCTGAACAATTTTGTTCATCGGAGCACAGCAGAAGGCCAAAGAGAAATTTCTTCTCATGCTAGGCTTTTTGAGTTGAAAGAGAATCCAGTCTTGTCTGGAAGGAGGAATTTTTCTTTAGGAATAGATGGTTGCGAAGAAAGTAAAGGGAATAAAGAAGTGAACCATCCAAAGGTACCGGAAAATGGTTCAACTGAAGGGACACAATTTGTGAGTTCTGGAAATTTTCAAGCTGACTTAGTTCTACTGGACAACAGAAAAGGAAATCTTAATGCTATGTCCATTGAAGCCAAGCTACTTAATCCAAATGGAAATGTGGGTCTTTTTACAATCAATAGTTTTGTAGAAAAAGAGGAATTTGAACCAGGATCTCAGTTAAATGTGCTGATGGACCTCTGCTGTGAGATGGGTGAACAAGGAGGTTCTGAAAATGGAATGTCATCGTCTGAACAAATTAATTTAAGCACAGAGTTTATTACATTAGAAAACAATTTAGTGATCCAATGCCCATTATGTCAAACTGATATCACAAAAATGAGTGAAGAGATGAGACATATTCATACAAATGAGTGCCTAGATAAATATGACACCAATGAGGTAACGGTTCCTACTGGACAAACAAAACTTAATACATTTCAACAGGATGTTGATACTAATCCTGTCCTTGAGTGGCTAAGTGCATTGGATCTGTGTCGATACGAAGAAGCTTTTATTAAAGAAGAGATTGATTGGGATACTCTGCAGTGGCTAACAGAAGAGGATCTTCTCAGTATTGGCGTTGTTGCTCTTGGGCCTAGGAAGAAAATTCTCCACGCTCTTAAGGAGCTTCGTCAAAGTAACTGTATTGGTCAAGATAGGGGAAATGACCGTTCTATTTCAGGGTTAATCGAAAGGAAAAGGTTTGGCTTACCAGGAAACAAGCTGATCACAGAGTACTTCCCTGGGTCAGTGGCATATAAAGCTAGAGGTGATAATGTTTTCAGATATTTTGACAATATAGAAAATGCTAACAAAGGCTTAACTCAAAAGAGGGTTGGTATTCAAAGAAATATTAAACGAAGGACAATAAGAGAAATTCCTCCTTGGTGCTGCATACCTGGAACTCCTTTTAGAGTGGATGCCTTCCGTTATTTAAGAGGAGATTGCTGTCATTGGTTTTTAACACACTTCCATATGGACCATTATCAGGGTCTAACGAAAAACTTTTGCCATGGGAAGGTCTATTGCTCTGAAATTACAGCACGCCTTGTGCATACAAAGATTGGCGTCCCATGGGAAAGAATTCAAATTTTACCTCTAAACCAAAAAATTACGATTGGTGGTATAAATTTGACCTGTTTAGATGCTAACCACTGCCCTGGCTCTATAATAATTCTCTTTGAACCATCCAATAAAAAGGCAGTCCTTCACACTGGGGATTTCAGATTTTCTGCAGAGATGGTCAGCTCTTCTGTTTTGCAATCATCCTGTATCCACACTCTTATCTTGGACACGACTTACTGCAATCCCCAATATGACTTTCCAAGACAAGAGGAAGTGATTCAATTTGTTATTGATGCCATCCAAGCTGAAACTTTCAACCCCAAAACTCTTTTCCTCATCGGCACTTATACAATTGGAAAAGAGAGGTTATTCTTGGAGGTTGCAAGGACGCTCAAAAGGAAAGTATATGTTGGTGCTGGAAAGCTACATTTACTCGAGTGTTTGGGCTTACCTGAGGAGGACATCCAGTTATTTACATCAAATGAGATGGAAAGCTGCATACATGTTGTGCCAATGTGGACTATTGCAAGCTTTAAACGGTTGAAACACATATCTAACCGGTACTCGGAGCAATACAATCTCATAGTTGCTTTTTCTCCAACTGGTTGGACATTTGGAAAAGGAAAGAAAAAGACGCCTGGTAGAAGATTGCAACAGGGTACCATTATCAGGTATGAAGTTCCATACAGTGAGCACTGCAGCTTCACAGAACTCAAAGAATTTGTTCGATTTATTTCCCCCGAAAATATTATCCCGAGCGTGAACAACGAAGGTCCGGCATCCGTCGAAGCCATGCTGGCTCTTCTGTCTTCTCCTGATTCATAGGTCTCTCATATTTTCAGCTTATTACATTAGAATTTTCATGTTAAAATTTCATTGCTTGAACTTTTAACAGCACTATTGATCTTAAGCACGTATAAGTGCTTAAAAATAAAGTAGAAATGTATTAGTCTAAGTTATAGACTTTATTTCTTTTTCGAGATGACTAATTTCATGACACTCCTCTCATGTGTTTGCATATCTAACACTTAGATATTCTATTTATAAATAGGAACATCAAATCAGAAATCTTTTTTTTTATAATGATTAGAAGATGTGG

Network for GWHGAAEX015539

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00536.29	SAM_1	449	507	1.60E-17
PF07522.13	DRMBL	804	908	1.20E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.410
SRP064423	SRR2545915	Juvenile tuber	8.440
SRP108465	SRR5643513	five period of Gastrodia elata	7.000
	SRR5643514	five period of Gastrodia elata	6.960
	SRR5643515	five period of Gastrodia elata	4.750
	SRR5643524	five period of Gastrodia elata	6.070
	SRR5643525	five period of Gastrodia elata	1.330
	SRR5643528	five period of Gastrodia elata	1.690
	SRR5643658	five period of Gastrodia elata	1.220
	SRR5643659	five period of Gastrodia elata	5.100
	SRR5643660	five period of Gastrodia elata	6.560
	SRR5643661	five period of Gastrodia elata	5.810
	SRR5643662	five period of Gastrodia elata	4.480
	SRR5643663	five period of Gastrodia elata	4.190
	SRR5643664	five period of Gastrodia elata	3.770
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.490
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.830
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.920
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.090
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.760
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.990
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.510
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.470
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.590
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.590
SRP279888	Gastro	Gastrodia elata tuber	5.52
	Juven	Juvenile tuber	9.62
	Mother_Gastro	Mother tuber of Gastrodia elata	3.39
	Mother_Juven	Mother tuber of Juvenile	5.37