Detail information of GWHGAAEX015543/evm.TU.scaffold_68.75


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41975.00E-107FOG: PPR repeat
nrgi|672138207|ref|XP_008792851.1|0PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Phoenix dactylifera]
Swissprottr|Q9SMZ2|PP347_ARATH2.00E-107Pentatricopeptide repeat-containing protein At4g33170
trEMBLtr|D7TSQ8|D7TSQ8_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI33530.3}
TAIRAT4G331705.00E-107Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006428381842839971-
Transcript Sequence

Network for GWHGAAEX015543

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13041.5PPR_21111593.00E-08
PF01535.19PPR2152440.00011
PF13041.5PPR_23153621.20E-07
PF01535.19PPR3914150.0045
PF13041.5PPR_24184632.20E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.760
SRR2545915Juvenile tuber7.610
SRP108465SRR5643513five period of Gastrodia elata7.290
SRR5643514five period of Gastrodia elata8.150
SRR5643515five period of Gastrodia elata6.960
SRR5643524five period of Gastrodia elata7.940
SRR5643525five period of Gastrodia elata5.290
SRR5643528five period of Gastrodia elata3.200
SRR5643658five period of Gastrodia elata5.260
SRR5643659five period of Gastrodia elata9.110
SRR5643660five period of Gastrodia elata9.120
SRR5643661five period of Gastrodia elata8.760
SRR5643662five period of Gastrodia elata5.490
SRR5643663five period of Gastrodia elata8.900
SRR5643664five period of Gastrodia elata7.320
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.950
SRR6049655Rhizomagastrodiae_C368-T10_good_17.960
SRR6049656Rhizomagastrodiae_C368-T07_good_111.870
SRR6049657Rhizomagastrodiae_C368-T07_good_110.250
SRR6049658Rhizomagastrodiae_C368-T04_good_112.740
SRR6049659Rhizomagastrodiae_C368-T04_good_19.400
SRR6049660Rhizomagastrodiae_C368-T01_good_112.250
SRR6049661Rhizomagastrodiae_C368-T04_good_18.890
SRR6049662Rhizomagastrodiae_C368-T01_good_19.650
SRR6049663Rhizomagastrodiae_C368-T01_good_110.660
SRR6049664Rhizomagastrodiae_C368-T10_good_110.820
SRR6049665Rhizomagastrodiae_C368-T10_good_110.820
SRP279888GastroGastrodia elata tuber 10.74
JuvenJuvenile tuber10.94
Mother_GastroMother tuber of Gastrodia elata 2.57
Mother_JuvenMother tuber of Juvenile 4.33