Gene detail

Detail information of GWHGAAEX015546/evm.TU.scaffold_68.79

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672138215\|ref\|XP_008792855.1\|	0	PREDICTED: uncharacterized protein LOC103709336 isoform X1 [Phoenix dactylifera]
trEMBL	tr\|J3MXU5\|J3MXU5_ORYBR	6.00E-175	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB09G18240.1}
TAIR	AT2G26270	1.00E-113	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000064	2939720	2986870	+

Transcript Sequence
>GWHTAAEX015546 ATGAATTCCACCAACTTTATGTCTTTGTCTTCTTCATCCATTTCTGGGTCCGCTGGTCCTACAAATATGGGGCCCTTTAGAGGCCTGGTCATATGTGTTACTGGTCTCTCTAAAGAAGCAAGACAACAGATCATGGTTGCATCTGAAAGACTTGGAGGTCATTACAGCTCTAGTTTGAATCCCAGTTGCACCCATCTTGTGGTGCAGATATCCTGCCAAACAATACTCTGTGTTGGGAGAAAGTTTGAGCATGCTTTGAAGCATGGGCAAAGAAATGGCCTTTTTGTTGTTACTTTGGGTTGGTTTGTTGACAGCGTCAGGAAGAACGTGAGAATGAGTGAATCTCGCTATATCATTAAAAATGTTGGAGAAAGTCGCTTCTCGCTGGTCAAGTCGGATGGATTTTTGAGCCTCCCTGGAATTGAAAAGTCTTGCCTTCCGATGGCTCTTCATGGTGTTGATAAATCTTCCGATGTGAACAACACAAGTCAATTAAGTAAACAATCTCTATGGAAAGAATATAACAATGGATCACTCTTTTCCAATGATTTTATTTTCATTGATACTGATATATCAGCTGAATTGAAAAAGAAGGTTGTTGATGCAGCTAGCAGGGAAGGTGCAAAGTTCTTGGATCATTGGTTTCTTGGCTCTCCTGCAAGTCATGTTGTTTGTGATAGTTCTTCCATTAAAAAATATATTGGTCATGCTGACACCCTTGTGACGGTTGCAAATATTCTTGAGAATGATCAGATCAATCAAATAGGAGAGGATGCGAAAGAACCAGGTCAAACTTTCTTACATTCTACAAATTCTTATGTCAGTGGAAATTTAAAAATTTCCCTTGAGGATAGACGCAAGTATATTGAATTTGCAAAACTTGGTGTGAGAAATCGGCGTTCTCGCTGCATGCAATCTTGTCAGATGCCACTTCATCCTATTACTCCCTGCAGCCTCCTTGAGTCAGTGTGTTGGTCAGTATCTGAGCCAACTTCTTCAGCCGGCTTTTTCACAGAATTAACCGAGATTGATGAGTCTAATTTCTCTTTTAATGATGAAAAAAGTTGTGGAAGGAATTTTGAAGTATCAATTGAACCACTCTCTCGCATGTTAAGAGAAAGTGAGAAGTGTGAGGTGATATTTAGGAATCACTTTCTTACAATACTATTTCCAATTGATCGGTTTGGTGAGCTTGGGCCTTCATCAAGGACTTTCTTTAGTGATGGTGGCTTTACTCGCATACAAATTCTGGATCACATCCATAACTTCTATCTGGAGAACTTAACTGCGGTGGAGATAGAAGCAGCAATCCACACGGACTCGAGGCATGCTGATCGTCTTCGAGCCCTTTATGCAAGTGCAGAAGCTATGATACAGGATTTCGTGCCATTTCCGCGCATAGATTTTCTAGGAAGCAGGAGGTTCTTTGAGGCTTTGAAGCGAAGCTATGGGCCTAACAGCAGCAGTTGCTATGAGCTCCTCTTGCGGGCTTGA

Network for GWHGAAEX015546

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12738.6	PTCB-BRCT	29	101	1.50E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.620
SRP064423	SRR2545915	Juvenile tuber	6.990
SRP108465	SRR5643513	five period of Gastrodia elata	7.100
	SRR5643514	five period of Gastrodia elata	7.120
	SRR5643515	five period of Gastrodia elata	6.210
	SRR5643524	five period of Gastrodia elata	6.570
	SRR5643525	five period of Gastrodia elata	2.560
	SRR5643528	five period of Gastrodia elata	1.610
	SRR5643658	five period of Gastrodia elata	2.050
	SRR5643659	five period of Gastrodia elata	8.600
	SRR5643660	five period of Gastrodia elata	9.070
	SRR5643661	five period of Gastrodia elata	8.190
	SRR5643662	five period of Gastrodia elata	8.140
	SRR5643663	five period of Gastrodia elata	7.240
	SRR5643664	five period of Gastrodia elata	7.560
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.970
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.950
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.380
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.540
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.750
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.240
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.750
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.450
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.450
SRP279888	Gastro	Gastrodia elata tuber	9.20
	Juven	Juvenile tuber	9.24
	Mother_Gastro	Mother tuber of Gastrodia elata	10.30
	Mother_Juven	Mother tuber of Juvenile	7.61