Gene detail

Detail information of GWHGAAEX015550/evm.TU.scaffold_68.83

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672122022\|ref\|XP_008784329.1\|	9.72E-57	PREDICTED: uncharacterized protein LOC103703296 [Phoenix dactylifera]
trEMBL	tr\|M0SC62\|M0SC62_MUSAM	6.00E-50	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P05940_001}
TAIR	AT1G72510	2.00E-42	Protein of unknown function (DUF1677)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000064	3012127	3013629	+

Transcript Sequence
>GWHTAAEX015550 TCGTCACATGCTTCGGGTGCACCACAATATCAATTAGTCGGGATGGTGTAACCTGGGGCCGACGTCACACACCGAAAAGAACCAATAGTATTAAACCACCACTCATTTTCTGAAAAATCCACGTGGAACGCTTGCGTTAATGGGTGAACACACAAGTTAACGCTACAGCTGGCAGCGCAAACAAGATAGGTTAGCCGGCAAGCCACCTCACCTAACTGACGTGTCTCACTTTCTCGCTTGCGGCCATCGGGCCCCACATGGACCCCAATCATCGGCGTGGGCCCCACCAATCCGGCTTTCCTCCAATGCCGGTTACAAACAGCGAAACTGACGGGCACAATAAATCCCCCATTTCCATCCGTTCTTTTCTCCTCCATTGCCCAAACAGAACCCCTGCAACGAGCATCCGCGCGAAATCCCTTCTCCAATTTGAATTCAAACTTTACGAATCACTTTGCGCTTGTGTAGAATCATCAGCGAGTGATTTGATCCTGAGATGTCTCTGGCCGGAGATGCCATTTTCTCCGTGATCAGCAAGGAATCCGCAGAGGAAACGGAGGCGAAATCTCTCGATACTTCCGTTGTATGGGAGAAGGAGCGATAGATAGCTCATCCCCTTTCAGATTGCTCTCACACAACCCCATACTTTGCGCAACACATATGACCATCTCTGCGGGGGAAACGATGGCGGAGGTCGAGTTTGCCAAGTGCGAGTGCTGCGGCTTGACAGAGGAGTGCACGCCCGCATATATCCTCTGCGTGCGGGAGAGACACCATGGCCGCTGGATCTGCGGCCTGTGCTCGGAAGCCGTTGTCGATGAGATCCGACGGTCAGATCGCCGGATCTCCACCGAAGAAGCACTTTCCCGCCACATGAGCTTCTCGCGCGATTTCCGCTTTCGCGCTTTACCGCCACAGAGATCTGCCGAGCACCTGATCGCAGCCATGAGGCAGCTTCTTCGCCGTGGCTTGGAATCGCCGCGGGCCCTCAGATCGGTGCCGTCGAGCCCCCGCCGGCCGACCGAAGATGATGGATCGGATGCTGTTTCCCGGTCCTCGCTCGTACGTTCCGGTAGCTGCTTCCCCACCATCGCTGGCTGAGAAAAAACGCAAGGAATCAATTAATAAATAAACCATTTCTTACTTTCTTTCTTCGTTGGTTGAAGATCATAAATCTTTTTTAAATAAATTTCAATTTAAAACTTGCAATTCTGTTGTCGTTCTTGATACGATCTTTTTGAGCTGATTTGTGATTGGAATTATATATTTCTCCAATGGGCGATGCCTTTGATCTGCTAAACGTGATACTCTTAAAAAAGTGAACATTAGGAAAGGACAATATATATAATAATTGGTTGCAATTCCAACTCTAAAATAAAATTTTTGATATATTAAGGGTGCATGTATAATATTTTTTATTAGAAAAATAGATTTTC

Network for GWHGAAEX015550

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07911.12	DUF1677	37	127	1.30E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.050
SRP064423	SRR2545915	Juvenile tuber	24.000
SRP108465	SRR5643513	five period of Gastrodia elata	104.950
	SRR5643514	five period of Gastrodia elata	172.340
	SRR5643515	five period of Gastrodia elata	88.040
	SRR5643524	five period of Gastrodia elata	109.880
	SRR5643525	five period of Gastrodia elata	84.190
	SRR5643528	five period of Gastrodia elata	63.130
	SRR5643658	five period of Gastrodia elata	209.440
	SRR5643659	five period of Gastrodia elata	67.410
	SRR5643660	five period of Gastrodia elata	73.160
	SRR5643661	five period of Gastrodia elata	54.980
	SRR5643662	five period of Gastrodia elata	132.560
	SRR5643663	five period of Gastrodia elata	131.230
	SRR5643664	five period of Gastrodia elata	173.820
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	134.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	182.850
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	179.560
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	102.640
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	147.550
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	127.640
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	127.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	118.990
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	132.710
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	114.760
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	155.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	155.440
SRP279888	Gastro	Gastrodia elata tuber	137.15
	Juven	Juvenile tuber	99.71
	Mother_Gastro	Mother tuber of Gastrodia elata	143.99
	Mother_Juven	Mother tuber of Juvenile	104.08