Detail information of GWHGAAEX015553/evm.TU.scaffold_68.87
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|337746181|ref|YP_004640343.1| | 2.00E-50 | hypothetical protein KNP414_01911 [Paenibacillus mucilaginosus KNP414] |
| nr | gi|695029250|ref|XP_009402033.1| | 9.07E-147 | PREDICTED: putative pectinesterase 63 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FKF3|PME63_ARATH | 9.00E-118 | Putative pectinesterase 63 (Precursor) |
| trEMBL | tr|M0T0N3|M0T0N3_MUSAM | 7.00E-148 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
| TAIR | AT5G61680 | 3.00E-117 | Pectin lyase-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000064 | 3161484 | 3172528 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015553
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01095.18 | Pectinesterase | 37 | 321 | 2.30E-64 |
 | ||||
| Protein Sequence | ||||
Gene family
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01051 | E3.1.1.11 | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 | ||
| Two-component system | map02020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042545 | Biological Process | cell wall modification |
| GO:0030599 | Molecular Function | pectinesterase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.870 |
| SRR2545915 | Juvenile tuber | 0.330 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.080 |
| SRR5643514 | five period of Gastrodia elata | 0.060 | |
| SRR5643515 | five period of Gastrodia elata | 0.000 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.210 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.190 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.110 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.070 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.150 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.210 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.100 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.04 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.05 | |
| Mother_Juven | Mother tuber of Juvenile | 0.07 |