Detail information of GWHGAAEX015560/evm.TU.scaffold_68.95
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|37520484|ref|NP_923861.1| | 5.00E-21 | serine/threonine kinase [Gloeobacter violaceus PCC 7421] |
| nr | gi|672161346|ref|XP_008800485.1| | 0 | PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Phoenix dactylifera] |
| Swissprot | tr|Q9C8M9|SRF6_ARATH | 0 | Protein STRUBBELIG-RECEPTOR FAMILY 6 (Precursor) |
| trEMBL | tr|M0RRU6|M0RRU6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P13160_001} |
| TAIR | AT1G53730 | 0 | STRUBBELIG-receptor family 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000064 | 3478967 | 3507121 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015560
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 25 | 65 | 6.20E-07 |
| PF13855.5 | LRR_8 | 140 | 199 | 1.10E-09 |
| PF07714.16 | Pkinase_Tyr | 405 | 676 | 2.80E-42 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-V |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.530 |
| SRR2545915 | Juvenile tuber | 4.870 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.080 |
| SRR5643514 | five period of Gastrodia elata | 7.300 | |
| SRR5643515 | five period of Gastrodia elata | 7.950 | |
| SRR5643524 | five period of Gastrodia elata | 6.660 | |
| SRR5643525 | five period of Gastrodia elata | 3.510 | |
| SRR5643528 | five period of Gastrodia elata | 2.670 | |
| SRR5643658 | five period of Gastrodia elata | 3.290 | |
| SRR5643659 | five period of Gastrodia elata | 5.050 | |
| SRR5643660 | five period of Gastrodia elata | 3.910 | |
| SRR5643661 | five period of Gastrodia elata | 5.690 | |
| SRR5643662 | five period of Gastrodia elata | 4.200 | |
| SRR5643663 | five period of Gastrodia elata | 5.300 | |
| SRR5643664 | five period of Gastrodia elata | 4.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.270 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.600 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.410 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.580 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.660 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.420 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.320 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.330 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.330 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.52 |
| Juven | Juvenile tuber | 1.62 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.55 | |
| Mother_Juven | Mother tuber of Juvenile | 0.98 |