Detail information of GWHGAAEX015561/evm.TU.scaffold_68.96
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|390944042|ref|YP_006407803.1| | 5.00E-51 | pectin methylesterase [Belliella baltica DSM 15883] |
| nr | gi|743774028|ref|XP_010917367.1| | 0 | PREDICTED: pectinesterase 3 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q43867|PME1_ARATH | 0 | Pectinesterase 1 (Precursor) |
| trEMBL | tr|B9GXZ7|B9GXZ7_POPTR | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
| TAIR | AT1G53840 | 0 | pectin methylesterase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000064 | 3519519 | 3523187 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015561
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04043.14 | PMEI | 70 | 217 | 3.20E-29 |
| PF01095.18 | Pectinesterase | 243 | 535 | 1.70E-132 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042545 | Biological Process | cell wall modification |
| GO:0030599 | Molecular Function | pectinesterase activity |
| GO:0004857 | Molecular Function | enzyme inhibitor activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.660 |
| SRR2545915 | Juvenile tuber | 3.420 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 39.580 |
| SRR5643514 | five period of Gastrodia elata | 29.390 | |
| SRR5643515 | five period of Gastrodia elata | 27.600 | |
| SRR5643524 | five period of Gastrodia elata | 21.870 | |
| SRR5643525 | five period of Gastrodia elata | 18.910 | |
| SRR5643528 | five period of Gastrodia elata | 19.470 | |
| SRR5643658 | five period of Gastrodia elata | 12.260 | |
| SRR5643659 | five period of Gastrodia elata | 17.030 | |
| SRR5643660 | five period of Gastrodia elata | 18.120 | |
| SRR5643661 | five period of Gastrodia elata | 20.900 | |
| SRR5643662 | five period of Gastrodia elata | 13.590 | |
| SRR5643663 | five period of Gastrodia elata | 23.600 | |
| SRR5643664 | five period of Gastrodia elata | 14.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.230 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 32.550 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 41.430 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 22.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 29.370 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 25.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 33.390 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 25.150 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 51.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 60.620 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 75.410 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 75.410 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.04 |
| Juven | Juvenile tuber | 5.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 32.82 | |
| Mother_Juven | Mother tuber of Juvenile | 12.30 |