Gene detail

Detail information of GWHGAAEX015569/evm.TU.scaffold_68.109

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|343085920\|ref\|YP_004775215.1\|	7.00E-40	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
nr	gi\|672168999\|ref\|XP_008804519.1\|	0	PREDICTED: tyrosine-sulfated glycopeptide receptor 1 [Phoenix dactylifera]
Swissprot	tr\|Q9C7S5\|PSYR1_ARATH	0	Tyrosine-sulfated glycopeptide receptor 1
trEMBL	tr\|A0A061G9W0\|A0A061G9W0_THECC	0	Leucine-rich receptor-like protein kinase family protein, putative isoform 1 {ECO:0000313\|EMBL:EOY26168.1}
TAIR	AT1G72300	0	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000064	3863018	3866594	+

Transcript Sequence
>GWHTAAEX015569 TCTGAATCAAATTATCATGAGCAGCGCAGTATTTATATAAATTAAATATATTAAATTCACTAGCTTCTAAGACCCGCTCTAAATCGTCGTCTATCCCTTGAGTCAACAGTCACCCTCTCTCTTTTTCCCCTTTCCTTCAATAGAAGCAGAGAACTTTCCCGTGCAATTTTTGAGCCTCGTTCGTAGCAGTCATTCATGAAAGCTAAAGATCTATAGCCAAAAAAACAATGATCTTTCTGCCACACCCTGTCATCTCCACCTTCTTCTTGTTCTTATTCCTTGTTCCTCATAATGGCTGCACACAGAAAGAGAAGAACTCTCTGCTCATTTTTCAATCCAACCTTACCTTCAGTTCAAACAACACTCCCCTTACTTCTTGGTTCGCCACTGATGACTGCTGCCAGTGGGAAGGGGTCTCATGTGATTCCAATGGATCAGTCACAGCCCTCTCTTTGGCCGTCAAAGGTCTCGGAGGGAGAATCTCGGATTCCCTTGCTGCTCTGCCCCAACTGACTAGACTAAACCTCTCTTACAATAGGTTATCCGGCGAACTCCCCGCCAAAATTCTCTTCCTGCCCAGACTCGTCTCCATGGATGTCAGCTTCAACCATCTCTCCGGCAGGTTGCCGCCAGCGATGCCGCCGTCTTCTGAAAAATTCTCCCTGCAGGTGCTTAACCTGTCGAGCAACTCTTTTGCAGGTTCATTCCCTGATCTGGGCAGCCTTGCTAGATTTCTCACAGTGCTGAACATAAGCAACAACAGCTTCTCCGGCCCAATTCCACCCTCTATCTGCAGCCTATCACATACCATCAGGGTAATGGACCTTTCCTGCAACCACTTTTCAGGCGATATCCCGCCGGGGCTCAGCAGCTGTTCGGCTCTGACAGAGTTTCGGGCAGGTATGAATAATCTGTGGGGGAAAATTCATCAGGATCTCTTCCACATGCCTTCGTTGCAGCTTCTTTCATTGCCGTTCAATCAGCTCTCAGGGACTCTTGAGGATGCGCTCATCGCCAAACTGATGAATCTGACCATTCTCGACCTCAGTAGCAATAACCTGACTGGTAAGCTCCCGGCCTCAATCAGCCGTATGCAGTTCCTCGAGCAGCTGATCTTGCACGATAACCAGCTTTCAGGCACCCTGCCTCCGGAATTAGCCAACTGCACTAAGCTTAAGAATCTCAATCTCAGGTTTAATAGCTTCAACGGTAGTATTGCAGTGGTCAACTTCTCCAGTCTCTCCAGCCTCAATATGGTTGATTTAGGGAACAATAAGTTCATCGGAGACATACCCACCAGTTTGTACTCATTAAGGTCCCTGAAGGCGTTGCGGCTATCTATGAATTCCATTAACGGAACGATTGTTCCGGCTATGGCAGAGATGCAAGCACTTTCCTACCTTTCTCTAGCCGGTGATGGTTTAGAGAACATCACAGCTGCACTCCAGATACTCAAGGATTGTAGAAATCTCAGCGCTATTATAATCTCAAAAAACTTCATTAAGGAGGCAATACCTACGGATATCGAATGGGAGGGAAGATACTTCCAGAATCTGCAAGTTTTGAGTCTAGGGGCTTGTGAACTTACCGGTAAAATTCCTCTCTGGTTATCCAAACTCGATAAACTTTTGGTCCTGGACCTATCCGAAAACCGACTCACAGGTCCACTCCCTGCATGGTTGGGCTCATTGCCCCGCCTTTTCTATCTTGAGTTGTCCGGGAACCTTCTCTCCGGAGAAATTCCGCCGGAAATTACAGGGCTGCGAGCACTGACGATGGATCAATTTGAGTCTCGAATTGATCAAGGCTTTCTTGACTTTCCGGTATTCATCTTACGGAAAAATGGATTGGGCCTGCAGTACAATCAGCTGAAAGAGCTCCCTCCGGCAATTAAGCTTGGGAATAACAGTCTGCATGGAAGGATACTCCCGCAAATCGGACGGATGAAGAATCTTCATGTGCTGGACCTCAGCCGGAATGATTTCTCCGGCATCATACCGACACAGCTCTGCAGTCTCACCAACTTGGAAAGGCTGGAACTGTCCTCCAACTATCTCAGCGGCATGATACCTTCCTTGTTAAGCAATCTTCACTTCCTTGCTTCATTCAACGTGGCTCACAACAATTTAGAGGGTCCGATTCCGTCGGGCGGGCAATTTGATTCATTTCCCATCGCCAGCTACGAAGGGAACGCTAAGCTCTGCGGCAAACTTCTCCCGCAAAAATGCACCAACAAATCGGGAGATGGAGCTCCCTCGAAGAAGACAAACCATGTGAACAAGAGATTCAGCATGTCTTTGGGTATCTGCATTGGAGGGGGATTAGTTGTCGTCGGCTCTGCCCTCATCATAATTTATATAATGAGAGCAAGGCAAAGAAGAAGCAATGGCGGTAACAAGATAAAGTCCAATATGATTTCTGCAGGCTCGCTCCCCAGCCTTCCGCTCAGTGATTCCACCTTCATAACGACGCCAAATTCAGGAAAATCACCTGGCAAGAGGCTTCTTATGTCCGACATACTGAAGGCAACAATTAACTTTGGTCAAGAAAACATAATTGGTTCGGGCGGCTTTGGGATGGTTTACAAGGCTACTCTTCTGGATGGTTCCAAGCTCGCAATCAAGAAGCTGTCCGGCGAAATGTGCTTGATGGAAAGGGAATTCAGGGCAGAAGTGGAGGCTCTTTCCAGCGCCCAGCATGAGAATCTTGTGTCCCTGCAGGGTTACTGCATGCACGGAAGCTCATGGATACTAATCTATTCATACATGGAGAACGGAAGTCTAGACTACTGGCTGCATGAGAAGGCAGATGGAGGAGGCTCAGTGCTGGAGTGGCCCACAAGGTTGAAGATTGCACAAGGGGCAAGCCGGGGCCTACGCTACATCCACCAAACTTGCGATCCCCACATTGTTCACAGAGACATCAAATCTAGCAATATTCTCCTTGATGAACATTTCGAGGCTCATGTTGCAGATTTCGGCCTGTCCCGTTTGATTCTTCCTTACAACACGCACGTGACAACCGAGCTGGTAGGCACGCTTGGGTACATCCCGCCGGAGTACAGCCAGGCCTGGGTTGCCACATTGAGAGGGGATATGTACAGCTTCGGTGTCGTCCTTCTGGAACTCCTCACTGGGAGGCGGCCAGTTGAAATTTTCAAGTCCAAGGATTCATCAGACCTTGTGGTTTGGGTGAATGGGATGAGAAATCAAGGAAAGCAGAGTCAGGTTTTTGATCTTCTGCTTAGGGGAAAGGGTTTTGAGGAGCAGATGCTGAAGGTTCTTGAGGTTGCTTGCATGTGTGTACATAATAATCCATTTAAAAGGCCGCCGATTGGGGAAGTAGTGGCTTGGTTAGAAATTATAGGTGTCGGCAGAGAAATGCTTCAGTGAGTTTGTTTCTGTATTTCTACAGTCAGGTGTAGAACAGAAGATTCAAAATCGACTATGGCGAGTAGCTGATATCCGTTATATCTATGTTAGCATCTTGCAATGTAGGATGAATGAATGACACGTTCAAACCAGTCATCAAACAATCCTTTTTATAGACCAATTTTTATTATATTTTATTTCTGATA

Network for GWHGAAEX015569

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.11	LRRNT_2	27	66	5.40E-07
PF00560.32	LRR_1	170	191	0.28
PF00560.32	LRR_1	267	287	0.04
PF13855.5	LRR_8	442	501	3.00E-09
PF13855.5	LRR_8	575	634	1.70E-06
PF00069.24	Pkinase	773	1040	2.40E-41

Protein Sequence

>GWHPAAEX015569
MIFLPHPVISTFFLFLFLVPHNGCTQKEKNSLLIFQSNLTFSSNNTPLTSWFATDDCCQWEGVSCDSNGSVTALSLAVKGLGGRISDSLAALPQLTRLNLSYNRLSGELPAKILFLPRLVSMDVSFNHLSGRLPPAMPPSSEKFSLQVLNLSSNSFAGSFPDLGSLARFLTVLNISNNSFSGPIPPSICSLSHTIRVMDLSCNHFSGDIPPGLSSCSALTEFRAGMNNLWGKIHQDLFHMPSLQLLSLPFNQLSGTLEDALIAKLMNLTILDLSSNNLTGKLPASISRMQFLEQLILHDNQLSGTLPPELANCTKLKNLNLRFNSFNGSIAVVNFSSLSSLNMVDLGNNKFIGDIPTSLYSLRSLKALRLSMNSINGTIVPAMAEMQALSYLSLAGDGLENITAALQILKDCRNLSAIIISKNFIKEAIPTDIEWEGRYFQNLQVLSLGACELTGKIPLWLSKLDKLLVLDLSENRLTGPLPAWLGSLPRLFYLELSGNLLSGEIPPEITGLRALTMDQFESRIDQGFLDFPVFILRKNGLGLQYNQLKELPPAIKLGNNSLHGRILPQIGRMKNLHVLDLSRNDFSGIIPTQLCSLTNLERLELSSNYLSGMIPSLLSNLHFLASFNVAHNNLEGPIPSGGQFDSFPIASYEGNAKLCGKLLPQKCTNKSGDGAPSKKTNHVNKRFSMSLGICIGGGLVVVGSALIIIYIMRARQRRSNGGNKIKSNMISAGSLPSLPLSDSTFITTPNSGKSPGKRLLMSDILKATINFGQENIIGSGGFGMVYKATLLDGSKLAIKKLSGEMCLMEREFRAEVEALSSAQHENLVSLQGYCMHGSSWILIYSYMENGSLDYWLHEKADGGGSVLEWPTRLKIAQGASRGLRYIHQTCDPHIVHRDIKSSNILLDEHFEAHVADFGLSRLILPYNTHVTTELVGTLGYIPPEYSQAWVATLRGDMYSFGVVLLELLTGRRPVEIFKSKDSSDLVVWVNGMRNQGKQSQVFDLLLRGKGFEEQMLKVLEVACMCVHNNPFKRPPIGEVVAWLEIIGVGREMLQ

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-Xb-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005515	Molecular Function	protein binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.360
SRP064423	SRR2545915	Juvenile tuber	5.580
SRP108465	SRR5643513	five period of Gastrodia elata	2.940
	SRR5643514	five period of Gastrodia elata	1.210
	SRR5643515	five period of Gastrodia elata	6.020
	SRR5643524	five period of Gastrodia elata	1.690
	SRR5643525	five period of Gastrodia elata	5.880
	SRR5643528	five period of Gastrodia elata	7.040
	SRR5643658	five period of Gastrodia elata	1.530
	SRR5643659	five period of Gastrodia elata	5.720
	SRR5643660	five period of Gastrodia elata	2.420
	SRR5643661	five period of Gastrodia elata	5.230
	SRR5643662	five period of Gastrodia elata	9.420
	SRR5643663	five period of Gastrodia elata	4.000
	SRR5643664	five period of Gastrodia elata	15.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.330
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.820
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.390
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.320
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.970
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	15.790
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.520
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.880
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.660
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.150
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.150
SRP279888	Gastro	Gastrodia elata tuber	3.88
	Juven	Juvenile tuber	3.10
	Mother_Gastro	Mother tuber of Gastrodia elata	30.92
	Mother_Juven	Mother tuber of Juvenile	7.88