Detail information of GWHGAAEX015572/evm.TU.scaffold_68.112
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|307595018|ref|YP_003901335.1| | 1.00E-12 | Zinc finger TFIIB-type domain-containing protein [Vulcanisaeta distributa DSM 14429] |
| KOG | KOG1598 | 3.00E-118 | Transcription initiation factor TFIIIB, Brf1 subunit |
| nr | gi|743765150|ref|XP_010912794.1| | 0 | PREDICTED: transcription factor IIIB 60 kDa subunit-like isoform X1 [Elaeis guineensis] |
| trEMBL | tr|J3M5U3|J3M5U3_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB05G19670.1} |
| TAIR | AT3G09360 | 3.00E-118 | Cyclin/Brf1-like TBP-binding protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000064 | 3960429 | 4012999 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015572
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00382.18 | TFIIB | 94 | 151 | 5.20E-13 |
| PF00382.18 | TFIIB | 196 | 254 | 4.60E-10 |
| PF07741.12 | BRF1 | 412 | 541 | 1.30E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0070897 | Biological Process | DNA-templated transcriptional preinitiation complex assembly |
| GO:0017025 | Molecular Function | TBP-class protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.520 |
| SRR2545915 | Juvenile tuber | 6.480 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.300 |
| SRR5643514 | five period of Gastrodia elata | 6.240 | |
| SRR5643515 | five period of Gastrodia elata | 6.350 | |
| SRR5643524 | five period of Gastrodia elata | 6.050 | |
| SRR5643525 | five period of Gastrodia elata | 5.070 | |
| SRR5643528 | five period of Gastrodia elata | 4.510 | |
| SRR5643658 | five period of Gastrodia elata | 5.330 | |
| SRR5643659 | five period of Gastrodia elata | 8.120 | |
| SRR5643660 | five period of Gastrodia elata | 8.310 | |
| SRR5643661 | five period of Gastrodia elata | 6.970 | |
| SRR5643662 | five period of Gastrodia elata | 7.270 | |
| SRR5643663 | five period of Gastrodia elata | 7.640 | |
| SRR5643664 | five period of Gastrodia elata | 7.810 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.600 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.360 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.200 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.010 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.930 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.140 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.220 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.310 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.200 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.200 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.41 |
| Juven | Juvenile tuber | 11.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.56 | |
| Mother_Juven | Mother tuber of Juvenile | 12.39 |