Detail information of GWHGAAEX015580/evm.TU.scaffold_68.126


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08003.00E-37FOG: Predicted E3 ubiquitin ligase
nrgi|224112257|ref|XP_002316133.1|1.78E-37zinc finger family protein [Populus trichocarpa]
Swissprottr|P0CH30|RING1_GOSHI3.00E-19E3 ubiquitin-protein ligase RING1
trEMBLtr|A9PB64|A9PB64_POPTR7.00E-38Zinc finger family protein {ECO:0000313|EMBL:EEF02304.1}
TAIRAT1G268003.00E-37RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006444310824432447+
Transcript Sequence

Network for GWHGAAEX015580

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_21111538.40E-14
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms106.190
SRR2545915Juvenile tuber472.140
SRP108465SRR5643513five period of Gastrodia elata52.290
SRR5643514five period of Gastrodia elata41.190
SRR5643515five period of Gastrodia elata84.010
SRR5643524five period of Gastrodia elata34.640
SRR5643525five period of Gastrodia elata141.000
SRR5643528five period of Gastrodia elata268.100
SRR5643658five period of Gastrodia elata76.430
SRR5643659five period of Gastrodia elata145.980
SRR5643660five period of Gastrodia elata74.100
SRR5643661five period of Gastrodia elata113.950
SRR5643662five period of Gastrodia elata158.500
SRR5643663five period of Gastrodia elata109.120
SRR5643664five period of Gastrodia elata310.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1146.270
SRR6049655Rhizomagastrodiae_C368-T10_good_1101.730
SRR6049656Rhizomagastrodiae_C368-T07_good_1109.190
SRR6049657Rhizomagastrodiae_C368-T07_good_1111.570
SRR6049658Rhizomagastrodiae_C368-T04_good_1124.780
SRR6049659Rhizomagastrodiae_C368-T04_good_1140.120
SRR6049660Rhizomagastrodiae_C368-T01_good_1155.520
SRR6049661Rhizomagastrodiae_C368-T04_good_1105.830
SRR6049662Rhizomagastrodiae_C368-T01_good_1129.010
SRR6049663Rhizomagastrodiae_C368-T01_good_1196.500
SRR6049664Rhizomagastrodiae_C368-T10_good_1122.410
SRR6049665Rhizomagastrodiae_C368-T10_good_1122.410
SRP279888GastroGastrodia elata tuber 104.25
JuvenJuvenile tuber80.29
Mother_GastroMother tuber of Gastrodia elata 544.71
Mother_JuvenMother tuber of Juvenile 417.72