Detail information of GWHGAAEX015584/evm.TU.scaffold_68.131
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|197287212|ref|YP_002153084.1| | 5.00E-111 | malate dehydrogenase [Proteus mirabilis HI4320] |
| KOG | KOG1494 | 0 | NAD-dependent malate dehydrogenase |
| nr | gi|743850091|ref|XP_010939796.1| | 0 | PREDICTED: malate dehydrogenase, chloroplastic-like [Elaeis guineensis] |
| Swissprot | tr|Q9SN86|MDHP_ARATH | 0 | Malate dehydrogenase, chloroplastic (Precursor) |
| trEMBL | tr|M0T3L3|M0T3L3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P02650_001} |
| TAIR | AT3G47520 | 0 | malate dehydrogenase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000064 | 4492816 | 4514090 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015584
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00056.22 | Ldh_1_N | 95 | 237 | 5.00E-48 |
| PF02866.17 | Ldh_1_C | 239 | 404 | 1.70E-47 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0006108 | Biological Process | malate metabolic process |
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0006099 | Biological Process | tricarboxylic acid cycle |
| GO:0016615 | Molecular Function | malate dehydrogenase activity |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0016616 | Molecular Function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| GO:0030060 | Molecular Function | L-malate dehydrogenase activity |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 30.070 |
| SRR2545915 | Juvenile tuber | 33.790 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 43.920 |
| SRR5643514 | five period of Gastrodia elata | 41.730 | |
| SRR5643515 | five period of Gastrodia elata | 41.860 | |
| SRR5643524 | five period of Gastrodia elata | 37.610 | |
| SRR5643525 | five period of Gastrodia elata | 34.440 | |
| SRR5643528 | five period of Gastrodia elata | 37.740 | |
| SRR5643658 | five period of Gastrodia elata | 35.260 | |
| SRR5643659 | five period of Gastrodia elata | 47.360 | |
| SRR5643660 | five period of Gastrodia elata | 44.200 | |
| SRR5643661 | five period of Gastrodia elata | 43.360 | |
| SRR5643662 | five period of Gastrodia elata | 56.490 | |
| SRR5643663 | five period of Gastrodia elata | 50.640 | |
| SRR5643664 | five period of Gastrodia elata | 41.810 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 40.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 43.920 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 50.790 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 38.050 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 32.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 28.800 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 41.120 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 42.210 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 65.020 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 50.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 55.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 55.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 44.99 |
| Juven | Juvenile tuber | 25.34 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 26.89 | |
| Mother_Juven | Mother tuber of Juvenile | 27.00 |