Gene detail

Detail information of GWHGAAEX015586/evm.TU.scaffold_68.134

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG3386	7.00E-47	Copper transporter
nr	gi\|743824285\|ref\|XP_010932741.1\|	6.27E-59	PREDICTED: copper transporter 5.1 [Elaeis guineensis]
Swissprot	tr\|Q93VM8\|COPT5_ARATH	2.00E-47	Copper transporter 5
trEMBL	tr\|M0SVU8\|M0SVU8_MUSAM	2.00E-55	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P05190_001}
TAIR	AT5G20650	7.00E-47	copper transporter 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000064	4549854	4556596	+

Transcript Sequence
>GWHTAAEX015586 ATGCTTGGAGTCGTAATCCCAATGGGGTTCTCCATCATGGACTTCAGAAAGATTTCTTCACTTGTATTTCTAAGCAAATCTGAAAAGCCCCTGGCTTCCATCTCCATAAAACAGTTTTGCGATATCTCGCCAGTAACGCCTCTTCCTTCTCTCGTTAAAGAGACGGTCTATAGCGATTCGCCGTTCCTATCTCTCGTTGAAGAACGCCTCTTCCTTCTCTCCTTCGCCCAAAAATCGCCATCTTCCCCTTCACCACCTGCGAAGATGATGCACATGACCTTCTATTGGGGAAAAACCGTAACGATCCTCGTAGATTCGTGGCGCACCGAGTCCTGGCTCTCCTACCTTCTCTCCCTTTTCGCCCTCTTTCTTGCATCTGTCTTCTACCAGTACACCGAGAATCGCCGTGTCCGCCTCAAGTTTCTTTCCAGATCCAAATCTTCTTCCATCGAAGCTCCCCTCCTCGCCGGCGGACGATCGGTGGCTAGGGTTTCGTCGGCGGCGCTGTTCGGTGTGAGCTCAGCGATAGGCTATCTTCTTATGCTCTCCGTTATGTCCTTCAATGGCGGCGTCTTTCTCTGTGTGGTGATCGGGCTGGCACTGGGATACTTGGTATTCCGAAGTGCAGCGGAGGATGATCTCATTTCCTTGAACAATTCGTGCGCCTGCTCGTGATCTGATCTATGTGTGGGGATGATTTCCCTATGCCAAAATATAATTTAGGGATTTGAACTATGTTTTTGTGCGATTTTACTTCCCAAAGAATAAAAGATTGTTCGTTGTTCATGTATTTGTGCAGTAATGTTATTGTGGATTAGGGTTCGGAATGGAGAAAGACTTAAAGTTGGCATGTATATTGTGTACTGTTTATGAATTTGGAATGGATTGCTTATTGTTTACAGCTATTAATTAGTTGTTTACTGAGAGTGATTTTTAAGGCTTTCTATTTTGAGATAAAGCAAATTTGTGAATTGTAAAACTATCAATTATGTAGGAATTATGCTGTGTGAGAATTAGTTTCTTAAATACCAAAAGGGGTTCTCTTCGGCAACATGAACGATTAAATTCCTATTTTTTTGAAGACAAACATGAGCCACATGACCTTGCTAGCAGCATTGGAAATTGCTTTGTATTTGTCTTCAGTGCTAGAGCAAGAAACAATTTGATTTTTTTGAAGACCACGAGATAAGGTTCTGACCAAGATATATGTAGCAATTGAAGGTAGACTTTCGATCATTTGGGCTGCCAGCTCAATCTGCATCACAATAAATCTAGAGGGAGAGATGCTGAAGTGGGTTGAAGGCGAATGATGGCGGTGGCAGTGATGCAGCGGTATCAGAGAAGGTTAATGACGGTGGTGGCAGTGATACAGAGGTACCGGAGAAGGCATTTAATGGCTTGCTAGTCAGTGGTGGATTGAAGGTGATGTTTGGCTGGGTGTGTTGGAGGTATTGAAAGTGCCAACGATGCTACGGAAAAGTGTTGGATCTGAGAAGGTTTTAGTAGGAGCATCGCTTAAATGGCCCTGTACAACCATTAGAGTGGGTACAAGGTTGGAGTGCTCCAAACCCACACTGTGTAGGATATCCTGAACATAGTGTGTTTGGGATAGCACCAAATGATCAGCTGCACGGGTGATGTTGATGTGAGGAGGTGGTGAGCAAATCCCATGTCTTTGAGAGAGAAGCAATCGGCAAAGAAGGCTATCAACCGTTGTAAAAGCAAGAAGTTGTTTCCAGTGAGGAGGACATCGTCGGCATAGATAAGAAATACCGAGATGTCGGAGCCGTTGTGATAGATAAACATAAAGGTATCATTCACCGCGATGCGAAAACCAAAAGATTCGAGGGTAAAGGAAAACTTGAAATGCCAGGCTCCGGGGTACTTTTTTTAATCCATAGAGAGCACGGTGAAGAAGAAAAATGTAATCTGGATGTGCGGCTCAAGTGATGCCAGGGGGCTCCTCCTTGAAGACAGTATCATGAAGGTCACCATTTAGGAGCGCGTTGTAGAAGTCAAGTTGTTTGATTTGCCACTTGAAGATAAGATCAATAGTAAGTATCAACTGGATGGTAACTTATTTGACAACATGACTGAATGTTTTAGAATAATCGATACCCTATTTTTTGAGTGAAGCCATGGGCAACCAAGCGAGCTGTGTCTAGCAATTGAACCATCACAGTTGTATTTGAGCTTGAAAAGCGATTTGTCGCTAACAATATTAGTGTATGTTGGTCGTGGAACTAAAGTTCAGATGCTTTTTTGTGAAGAGCTGAGAGCTCATCAAGCATAGCTTGAACCCAATGCGGATTTTTAAGTGATTTGTGATATGTGGATGGCACTGACAGTCACAATGTAGACTTTGGGCTTCAGGTTACCAGTTTTAGATGGAGTGAGCATATGATGAGTGTTATGGACTGGTTGAGGTGGCTGTATTGGATTAGAGGAGGCAGGAGAAGTAGCTGTTGAAGAGGTGCTTGGAGAGAGCCGGCATTGCAGTGGTCGGTGGATTCAGTGAAGGTAGGTGCTGTTGACTGCGAGCTGTTCCCAACATAATTAGAAACAGTGAGATGTGGTCTAGGGCTGCGGACTGAGGTGCTGCTGGCTGCAACTGAAAGGTTATTTTATGGAAATTAATTCAGCAAAAGTGGCATGCTGCAATATGTAGAACCTGTTGGAGCCAATATGATAACACATGTAAGCCTTGTGTTGACCTCTATTGCCAAGAATAACACAAAACACAAGGCACAGATCCGGGTTCCAATTATTTGTTGCATATGGTGTCAACCATGGAAACACAGACACAAATACTTTTTAAAAATAATAGTCATGTGGATGGTGAAATAAATAAGTGTTTGTATGGGGACTTCTGATGTAACTAATGGTAGGGTTGCCGGTTGATGAGGTGCGCAGCTGTTTGGAAAGCACAAGTTCAGAAGGTTGGAGTGCAAGAGCAGAGCACGACTAGTATCAACAATGTGACAGTGTTTTCGTTCAGCTTTGTCATTTTTCATAGGTGTATATGCGGCTGAAAAATGATGTTGAATGCCAAGAGTAGCAAGTGTGGTGGTAAACTTTTTATACTCACCATTTCCATTAGATTGAAATGCTATACTCTTAGAAGAAATGCTATTTTCAACCATTATTTTGAAAAACAAAAAAACATCAAGGGCGTCAGACTTGTTATAGAGCGGATACATCCGCGTAAAACTTGAAAATTATCAACAAAAATGATAAATTATCTATAATAAAACAATAACTTGGTAGGAGCAGGCCCCCAAATATCAGAAATAATAATATGTAGAGATGTTGGGGAACATGAATAATTATTAGGTAAATGCAAACAATGTTGCTTGGACATGTAACAAGCAACACTAGTGGAGAGAGGCTTCGGTGTTATTTGTAGAGATGCGGCAAGTTGCTGATGCTTATCAAGACCAGGATGGTTGAGATGACGATGCAAAGATTGGACGAATCCATATTGTTGAGGTTGGAAGATGGACTGGGA

Network for GWHGAAEX015586

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04145.14	Ctr	92	206	1.30E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14686	SLC31A1, CTR1	Mineral absorption	map04978

Gene Ontology

GO term	Ontology	Name
GO:0035434	Biological Process	copper ion transmembrane transport
GO:0005375	Molecular Function	copper ion transmembrane transporter activity
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.800
SRP064423	SRR2545915	Juvenile tuber	23.060
SRP108465	SRR5643513	five period of Gastrodia elata	38.460
	SRR5643514	five period of Gastrodia elata	40.290
	SRR5643515	five period of Gastrodia elata	40.070
	SRR5643524	five period of Gastrodia elata	39.820
	SRR5643525	five period of Gastrodia elata	119.090
	SRR5643528	five period of Gastrodia elata	123.080
	SRR5643658	five period of Gastrodia elata	151.000
	SRR5643659	five period of Gastrodia elata	27.680
	SRR5643660	five period of Gastrodia elata	23.460
	SRR5643661	five period of Gastrodia elata	30.700
	SRR5643662	five period of Gastrodia elata	36.010
	SRR5643663	five period of Gastrodia elata	28.590
	SRR5643664	five period of Gastrodia elata	34.990
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	35.220
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	42.100
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	39.270
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	35.950
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	41.140
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	48.210
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.430
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	38.670
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	32.150
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	32.400
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	45.620
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	45.620
SRP279888	Gastro	Gastrodia elata tuber	28.07
	Juven	Juvenile tuber	18.36
	Mother_Gastro	Mother tuber of Gastrodia elata	64.56
	Mother_Juven	Mother tuber of Juvenile	28.84