Detail information of GWHGAAEX015589/evm.TU.scaffold_68.137
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428226175|ref|YP_007110272.1| | 4.00E-29 | abortive infection protein [Geitlerinema sp. PCC 7407] |
| nr | gi|743839958|ref|XP_010937144.1| | 2.58E-135 | PREDICTED: uncharacterized protein LOC105056591 isoform X1 [Elaeis guineensis] |
| trEMBL | tr|A0A059D8V7|A0A059D8V7_EUCGR | 2.00E-124 | Uncharacterized protein {ECO:0000313|EMBL:KCW86841.1} |
| TAIR | AT1G14270 | 4.00E-82 | CAAX amino terminal protease family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000064 | 4609431 | 4650446 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015589
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02517.15 | Abi | 241 | 324 | 2.30E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0071586 | Biological Process | CAAX-box protein processing |
| GO:0004197 | Molecular Function | cysteine-type endopeptidase activity |
| GO:0030176 | Cellular Component | integral component of endoplasmic reticulum membrane |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.300 |
| SRR2545915 | Juvenile tuber | 8.460 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.490 |
| SRR5643514 | five period of Gastrodia elata | 4.280 | |
| SRR5643515 | five period of Gastrodia elata | 3.570 | |
| SRR5643524 | five period of Gastrodia elata | 4.220 | |
| SRR5643525 | five period of Gastrodia elata | 2.020 | |
| SRR5643528 | five period of Gastrodia elata | 1.900 | |
| SRR5643658 | five period of Gastrodia elata | 1.490 | |
| SRR5643659 | five period of Gastrodia elata | 2.920 | |
| SRR5643660 | five period of Gastrodia elata | 2.430 | |
| SRR5643661 | five period of Gastrodia elata | 2.620 | |
| SRR5643662 | five period of Gastrodia elata | 0.840 | |
| SRR5643663 | five period of Gastrodia elata | 1.860 | |
| SRR5643664 | five period of Gastrodia elata | 1.970 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.900 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.600 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.260 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.120 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.270 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.710 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.560 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.070 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.070 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.95 |
| Juven | Juvenile tuber | 4.15 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.72 | |
| Mother_Juven | Mother tuber of Juvenile | 1.78 |