Detail information of GWHGAAEX015590/evm.TU.scaffold_68.138
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672165416|ref|XP_008802609.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Phoenix dactylifera] |
| Swissprot | tr|Q9CA56|PP121_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g74600, chloroplastic (Precursor) |
| trEMBL | tr|F6GT87|F6GT87_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB43096.1} |
| trEMBL | tr|F6GT87|F6GT87_VITVI | 6.00E-77 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB43096.1} |
| TAIR | AT1G74600 | 0 | pentatricopeptide (PPR) repeat-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000064 | 4668363 | 4670966 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015590
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 186 | 233 | 6.30E-10 |
| PF13041.5 | PPR_2 | 286 | 335 | 5.80E-10 |
| PF01535.19 | PPR | 393 | 419 | 0.0095 |
| PF01535.19 | PPR | 460 | 486 | 0.6 |
| PF01535.19 | PPR | 489 | 517 | 1.00E-07 |
| PF01535.19 | PPR | 591 | 615 | 0.14 |
| PF13041.5 | PPR_2 | 688 | 735 | 3.70E-10 |
| PF01535.19 | PPR | 763 | 788 | 0.47 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 21.260 |
| SRR2545915 | Juvenile tuber | 6.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.050 |
| SRR5643514 | five period of Gastrodia elata | 10.060 | |
| SRR5643515 | five period of Gastrodia elata | 11.350 | |
| SRR5643524 | five period of Gastrodia elata | 8.090 | |
| SRR5643525 | five period of Gastrodia elata | 16.500 | |
| SRR5643528 | five period of Gastrodia elata | 12.710 | |
| SRR5643658 | five period of Gastrodia elata | 14.850 | |
| SRR5643659 | five period of Gastrodia elata | 4.360 | |
| SRR5643660 | five period of Gastrodia elata | 7.410 | |
| SRR5643661 | five period of Gastrodia elata | 6.510 | |
| SRR5643662 | five period of Gastrodia elata | 5.190 | |
| SRR5643663 | five period of Gastrodia elata | 4.830 | |
| SRR5643664 | five period of Gastrodia elata | 4.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.670 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.370 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.410 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 19.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 21.120 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.520 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.580 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 17.800 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.120 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.600 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.97 |
| Juven | Juvenile tuber | 8.78 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.91 | |
| Mother_Juven | Mother tuber of Juvenile | 14.82 |