Detail information of GWHGAAEX015603/evm.TU.scaffold_69.6
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|375149879|ref|YP_005012320.1| | 1.00E-27 | Alpha,alpha-trehalase [Niastella koreensis GR20-10] |
| KOG | KOG0602 | 2.00E-42 | Neutral trehalase |
| nr | gi|695021949|ref|XP_009398082.1| | 1.73E-62 | PREDICTED: probable trehalase [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FWC1|TRE_ORYSJ | 3.00E-59 | Probable trehalase |
| trEMBL | tr|M0SRU6|M0SRU6_MUSAM | 6.00E-63 | Trehalase {ECO:0000256|RuleBase:RU361180} |
| TAIR | AT4G24040 | 2.00E-42 | trehalase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000085 | 294209 | 295225 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015603
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module5 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01204.17 | Trehalase | 2 | 133 | 1.10E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01194 | TREH, treA, treF | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Starch and sucrose metabolism | map00500 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005991 | Biological Process | trehalose metabolic process |
| GO:0004555 | Molecular Function | alpha,alpha-trehalase activity |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.270 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.870 |
| SRR5643514 | five period of Gastrodia elata | 26.740 | |
| SRR5643515 | five period of Gastrodia elata | 11.920 | |
| SRR5643524 | five period of Gastrodia elata | 15.330 | |
| SRR5643525 | five period of Gastrodia elata | 0.380 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.530 | |
| SRR5643660 | five period of Gastrodia elata | 0.590 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.600 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.870 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.930 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.630 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.600 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.660 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.12 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.89 | |
| Mother_Juven | Mother tuber of Juvenile | 0.68 |