Gene detail

Detail information of GWHGAAEX015614/evm.TU.scaffold_69.32

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|352681945\|ref\|YP_004892469.1\|	7.00E-40	GTPase [Thermoproteus tenax Kra 1]
KOG	KOG2484	0	GTPase
nr	gi\|672157568\|ref\|XP_008798499.1\|	0	PREDICTED: guanine nucleotide-binding protein-like 3 homolog isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9M8Z5\|NSN1_ARATH	0	Guanine nucleotide-binding protein-like NSN1 {ECO:0000305}
trEMBL	tr\|M0SRV9\|M0SRV9_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P24980_001}
TAIR	AT3G07050	0	GTP-binding family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000085	1798893	1809747	+

Transcript Sequence
>GWHTAAEX015614 ATGGTGAAGAAGAGCAAAAAAAGTAAAAGTAAGCGAATCTCTCTTAAGAAAAAGCACAAGATCATACGAAAGGTAAAAGAACATCATAAAAAGAAGGCAAAGGAAGCAAAAAAGCTTGGCTTGAACCGTAAACGTAAAGTTGAGAAGGATCCAGGCATCCCTAATGACTGGCCATTTAAGGAGCAGGAACTCAAGGCGCTTGAAGAGCGCAGGGCCCGCGCAATCGAGGAATTAGAGCAAAAAAAGGCAGCTAAGAAAGAAAGAGCTAATAAAAGAAAACTAGGCTTACTCTCTGATGATATGGAAAAATTGGCTTCTGAAGCTTCTGCCAAGGATGATGAATTTTCAAATAGATTAATTGGGATAGAAGATATTGTAGTAACTAAAGGCTTTGATCACTCAGAGAGGACATTCTACAAGGAGCTAGTTAAGGTCATAGAAGCATCAGATGTAATTTTGGAGGTTCTTGATGCCAGAGATCCGCTAGGCACTAGATGCATTGACATGGAAAATATGATATTGAAATCCGATCCAAATAAGCGCATTGTTTTACTATTAAACAAGATAGATTTGGTTCCTCGGGAGGCTGCACAGAAATGGCTGAAGTATCTTCGAGAGGAGTTACCTGCTGTTGCATTCAAGTGCAGTACCCAAGAGCAAAGATCGAATTTAGGGTGGAAATCTACATCAAAAGCCCCAAAAGCAAGCAGCATATTGAAAACTAGCGATTGCCTTGGAGCCGAAACTCTTATAAAGCTACTGAAGAATTATTCTAGAAGTCATGAGATTAAATTATCAATTACTGTGGGCATTGTTGGACTTCCAAATGTTGGTAAGAGCAGTGTCATCAATAGCTTGAAGAGATCACATGTTGTCAATGTTGGTGCTACTCCTGGACTCACAAGATCAATGCAAGAAATCCATTTAGACAAGAATGTGAAGCTACTTGATTGCCCCGGCGTCGTAATGCTGAAGTCTGGGAAAAATGATATTGCGCTCCGGAATTGTAGAAGAATTGAAAAGCTTGATGATCCAATTACTCCGGTCAGGGAGATACTCAAGCTTTGTCCCTCTGAAAAATTGATGTCATTGTACAAGATATCTACCTTCAGTTCAGCTGATGAATTTCTCCAGAAAGTTGCTGCCATCAGAGGAAAGCTAAAAAAGGGAGGCATAGTGAACATTGAAGCTGCTGCAAGGATTGTGCTGCACGACTGGAATGAGGGAAAAATACCATATTACACTCTACCACCAAATAGGTGCCTAGGGGGACTTCCGGATTCTACGGTTGTATCAGAATTAGGGAAGGAATTCAATGTCGACGAGGCTTACAATAACGAGTCTTCTTACATCGGTAGCCTGTCATCTGCTGAAAATTTTCTTCATATTGAAGTCCCCCCAGGCGTTCCTCTGCAGTTTGATGAACAGATGCTAGACCAAGATGTGGGCAACCATAAAGTTGGCAAAATTCAACAAGAAGAAGCAATGAGTGAGAGTGTTGAAGAAGCGCACTCGGATGCAAATACCAACCCAATGAGCGGGCAAAATGACAAGCTGTACTCCGCTGATGGCATCTTCGATCCTCGCAAAAGAAGAGCGGATAAAAGGGCACGAAAGGCAAAAAAGGTGAGCACCGACGCGAATAATATAGACGCCGATTATGATTTCAAGGTGGATTATCGAATGAGCGACGCGGAGTCCGATCTCAGCGACACAGCGGAGGACAAAGATGAAGGCACCGATTATGTCCCCATGCCTGGAGATGAGCAAGATGATAAATGA

Network for GWHGAAEX015614

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08701.10	GN3L_Grn1	16	91	5.50E-17
PF01926.22	MMR_HSR1	269	329	1.50E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14538	NUG1, GNL3	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0005525	Molecular Function	GTP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	48.590
SRP064423	SRR2545915	Juvenile tuber	47.060
SRP108465	SRR5643513	five period of Gastrodia elata	46.150
	SRR5643514	five period of Gastrodia elata	42.860
	SRR5643515	five period of Gastrodia elata	42.190
	SRR5643524	five period of Gastrodia elata	43.520
	SRR5643525	five period of Gastrodia elata	24.830
	SRR5643528	five period of Gastrodia elata	33.970
	SRR5643658	five period of Gastrodia elata	31.370
	SRR5643659	five period of Gastrodia elata	47.770
	SRR5643660	five period of Gastrodia elata	49.380
	SRR5643661	five period of Gastrodia elata	45.830
	SRR5643662	five period of Gastrodia elata	51.770
	SRR5643663	five period of Gastrodia elata	44.080
	SRR5643664	five period of Gastrodia elata	45.210
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	47.530
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	40.600
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	52.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	49.220
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	60.770
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	59.560
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	60.500
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	54.650
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	50.780
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	57.660
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	42.630
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	42.630
SRP279888	Gastro	Gastrodia elata tuber	62.93
	Juven	Juvenile tuber	78.63
	Mother_Gastro	Mother tuber of Gastrodia elata	53.40
	Mother_Juven	Mother tuber of Juvenile	55.41