Detail information of GWHGAAEX015615/evm.TU.scaffold_69.35
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|302339380|ref|YP_003804586.1| | 0 | methionyl-tRNA synthetase [Spirochaeta smaragdinae DSM 11293] |
| KOG | KOG1247 | 0 | Methionyl-tRNA synthetase |
| nr | gi|672184904|ref|XP_008812682.1| | 0 | PREDICTED: probable methionine--tRNA ligase isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q9ZTS1|SYM_ORYSJ | 0 | Probable methionine--tRNA ligase |
| trEMBL | tr|M0T9Y1|M0T9Y1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P24850_001} |
| TAIR | AT4G13780_1 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000085 | 1961880 | 1977123 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015615
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF09334.10 | tRNA-synt_1g | 80 | 474 | 1.00E-150 |
| PF01588.19 | tRNA_bind | 705 | 799 | 2.00E-30 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01874 | MARS, metG | Metabolic pathways | map01100 |
| Selenocompound metabolism | map00450 | ||
| Aminoacyl-tRNA biosynthesis | map00970 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006431 | Biological Process | methionyl-tRNA aminoacylation |
| GO:0006418 | Biological Process | tRNA aminoacylation for protein translation |
| GO:0004825 | Molecular Function | methionine-tRNA ligase activity |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0004812 | Molecular Function | aminoacyl-tRNA ligase activity |
| GO:0000049 | Molecular Function | tRNA binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 61.530 |
| SRR2545915 | Juvenile tuber | 76.960 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 50.900 |
| SRR5643514 | five period of Gastrodia elata | 47.930 | |
| SRR5643515 | five period of Gastrodia elata | 48.820 | |
| SRR5643524 | five period of Gastrodia elata | 49.080 | |
| SRR5643525 | five period of Gastrodia elata | 38.720 | |
| SRR5643528 | five period of Gastrodia elata | 40.660 | |
| SRR5643658 | five period of Gastrodia elata | 39.300 | |
| SRR5643659 | five period of Gastrodia elata | 62.920 | |
| SRR5643660 | five period of Gastrodia elata | 67.750 | |
| SRR5643661 | five period of Gastrodia elata | 55.820 | |
| SRR5643662 | five period of Gastrodia elata | 50.810 | |
| SRR5643663 | five period of Gastrodia elata | 56.870 | |
| SRR5643664 | five period of Gastrodia elata | 56.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 52.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 49.980 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 55.420 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 56.980 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 58.840 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 61.070 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 59.540 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 60.610 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 56.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 56.430 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 56.320 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 56.320 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 79.57 |
| Juven | Juvenile tuber | 97.63 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 56.33 | |
| Mother_Juven | Mother tuber of Juvenile | 78.35 |