Detail information of GWHGAAEX015619/evm.TU.scaffold_69.47


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743824675|ref|XP_010932838.1|2.37E-107PREDICTED: beta-carotene isomerase D27, chloroplastic-like [Elaeis guineensis]
Swissprottr|C7AU21|D27_ORYSJ1.00E-98Beta-carotene isomerase D27, chloroplastic (Precursor)
trEMBLtr|B8BLE6|B8BLE6_ORYSI1.00E-96Putative uncharacterized protein {ECO:0000313|EMBL:EEC68482.1}
TAIRAT1G646801.00E-38Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008529390072953254-
Transcript Sequence

Network for GWHGAAEX015619

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13225.5DUF40331552343.80E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K17911DWARF27 Biosynthesis of secondary metabolites map01110
Carotenoid biosynthesismap00906

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms24.640
SRR2545915Juvenile tuber31.100
SRP108465SRR5643513five period of Gastrodia elata16.280
SRR5643514five period of Gastrodia elata20.790
SRR5643515five period of Gastrodia elata17.540
SRR5643524five period of Gastrodia elata18.960
SRR5643525five period of Gastrodia elata15.500
SRR5643528five period of Gastrodia elata13.960
SRR5643658five period of Gastrodia elata17.440
SRR5643659five period of Gastrodia elata25.050
SRR5643660five period of Gastrodia elata26.060
SRR5643661five period of Gastrodia elata20.450
SRR5643662five period of Gastrodia elata22.330
SRR5643663five period of Gastrodia elata28.570
SRR5643664five period of Gastrodia elata24.470
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.990
SRR6049655Rhizomagastrodiae_C368-T10_good_124.480
SRR6049656Rhizomagastrodiae_C368-T07_good_117.590
SRR6049657Rhizomagastrodiae_C368-T07_good_121.760
SRR6049658Rhizomagastrodiae_C368-T04_good_115.080
SRR6049659Rhizomagastrodiae_C368-T04_good_116.520
SRR6049660Rhizomagastrodiae_C368-T01_good_115.950
SRR6049661Rhizomagastrodiae_C368-T04_good_114.890
SRR6049662Rhizomagastrodiae_C368-T01_good_113.050
SRR6049663Rhizomagastrodiae_C368-T01_good_110.830
SRR6049664Rhizomagastrodiae_C368-T10_good_117.690
SRR6049665Rhizomagastrodiae_C368-T10_good_117.690
SRP279888GastroGastrodia elata tuber 36.08
JuvenJuvenile tuber33.74
Mother_GastroMother tuber of Gastrodia elata 18.11
Mother_JuvenMother tuber of Juvenile 32.57