Detail information of GWHGAAEX015622/evm.TU.scaffold_69.58
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502738|ref|YP_001958455.1| | 1.00E-14 | hypothetical protein Aasi_1435 [Candidatus Amoebophilus asiaticus 5a2] |
| KOG | KOG0167 | 0 | FOG: Armadillo/beta-catenin-like repeats |
| nr | gi|695058667|ref|XP_009417655.1| | 0 | PREDICTED: U-box domain-containing protein 10 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9C9A6|PUB10_ARATH | 0 | U-box domain-containing protein 10 |
| trEMBL | tr|K3YQT0|K3YQT0_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si016624m} |
| TAIR | AT1G71020 | 0 | ARM repeat superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000085 | 4029725 | 4033575 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX015622
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04564.14 | U-box | 258 | 329 | 1.30E-19 |
| PF00514.22 | Arm | 387 | 425 | 1.20E-07 |
| PF00514.22 | Arm | 469 | 508 | 1.50E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016567 | Biological Process | protein ubiquitination |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004842 | Molecular Function | ubiquitin-protein transferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.220 |
| SRR2545915 | Juvenile tuber | 2.970 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.770 |
| SRR5643514 | five period of Gastrodia elata | 3.310 | |
| SRR5643515 | five period of Gastrodia elata | 2.700 | |
| SRR5643524 | five period of Gastrodia elata | 3.380 | |
| SRR5643525 | five period of Gastrodia elata | 1.480 | |
| SRR5643528 | five period of Gastrodia elata | 0.760 | |
| SRR5643658 | five period of Gastrodia elata | 1.090 | |
| SRR5643659 | five period of Gastrodia elata | 1.540 | |
| SRR5643660 | five period of Gastrodia elata | 2.080 | |
| SRR5643661 | five period of Gastrodia elata | 1.370 | |
| SRR5643662 | five period of Gastrodia elata | 1.970 | |
| SRR5643663 | five period of Gastrodia elata | 1.820 | |
| SRR5643664 | five period of Gastrodia elata | 2.710 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.910 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.450 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.850 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.310 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.420 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.360 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.710 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.710 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.99 |
| Juven | Juvenile tuber | 0.83 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.41 | |
| Mother_Juven | Mother tuber of Juvenile | 1.54 |