Detail information of GWHGAAEX015628/evm.TU.scaffold_7.5


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|427716281|ref|YP_007064275.1|3.00E-1309-cis-epoxycarotenoid dioxygenase [Calothrix sp. PCC 7507]
KOGKOG12850Beta, beta-carotene 15,15'-dioxygenase and related enzymes
nrgi|614130803|sp|C3VEQ4.1|CCD1_ONCHC0RecName: Full=Carotenoid 9,10(9',10')-cleavage dioxygenase 1; AltName: Full=Carotenoid cleavage dioxygenase 1; Short=OgCCD1 [Oncidium hybrid cultivar]
Swissprottr|C3VEQ4|CCD1_ONCHC0Carotenoid 9,10(9',10')-cleavage dioxygenase 1
trEMBLtr|M0SIZ3|M0SIZ3_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P29770_001}
TAIRAT3G635200carotenoid cleavage dioxygenase 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000005191278236709-
Transcript Sequence

Network for GWHGAAEX015628

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03055.14RPE65585354.60E-117
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0016702Molecular Functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms81.620
SRR2545915Juvenile tuber79.810
SRP108465SRR5643513five period of Gastrodia elata89.750
SRR5643514five period of Gastrodia elata89.290
SRR5643515five period of Gastrodia elata82.740
SRR5643524five period of Gastrodia elata90.740
SRR5643525five period of Gastrodia elata94.490
SRR5643528five period of Gastrodia elata91.940
SRR5643658five period of Gastrodia elata100.370
SRR5643659five period of Gastrodia elata57.010
SRR5643660five period of Gastrodia elata62.190
SRR5643661five period of Gastrodia elata79.290
SRR5643662five period of Gastrodia elata53.930
SRR5643663five period of Gastrodia elata48.550
SRR5643664five period of Gastrodia elata61.330
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_179.530
SRR6049655Rhizomagastrodiae_C368-T10_good_189.080
SRR6049656Rhizomagastrodiae_C368-T07_good_175.550
SRR6049657Rhizomagastrodiae_C368-T07_good_180.710
SRR6049658Rhizomagastrodiae_C368-T04_good_171.200
SRR6049659Rhizomagastrodiae_C368-T04_good_178.720
SRR6049660Rhizomagastrodiae_C368-T01_good_170.860
SRR6049661Rhizomagastrodiae_C368-T04_good_166.750
SRR6049662Rhizomagastrodiae_C368-T01_good_159.580
SRR6049663Rhizomagastrodiae_C368-T01_good_162.230
SRR6049664Rhizomagastrodiae_C368-T10_good_179.750
SRR6049665Rhizomagastrodiae_C368-T10_good_179.750
SRP279888GastroGastrodia elata tuber 88.21
JuvenJuvenile tuber105.27
Mother_GastroMother tuber of Gastrodia elata 65.29
Mother_JuvenMother tuber of Juvenile 74.16